Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1289 ATGGCAGGTCTTCCACTACCGCCTCCAAACCCTCCACCATTATCAACTCGCAATCAGACTTCAACTTCAAGCTCCGCGAACTTCGCTCAAATTCCTTCATGGGTATCGCTGAAACGCAGTTCTTCTACGATCAAAACCGAGAAAATCCAACAAGGGAAGCTCGAGAATTTACATTTGGTTTCACTTTCCAAACAAGGGAAGCTCAAGGAAGCCCATGATTTTCTCAAAGAAATGGACGATGCTGATGTTTCTGTCACTCCACACTCGTATCAATGCCTATTTGAAGCATGTGGGAAGTTGAGATCCTTGGCTGATGGAAGATTAATTCACGATCGGCTGCGAAGAACAGTGAAGAACCCATCTGGGTCTATTGAGAATTGTCTTCTGAGAATGTACTGTGATTGTGGGAGTTGCATAGATGTACAGAAAGTGTTCGATGAAATGCTTATGAAAAACTTGGTGTCTTGGGTTATAGTCATATCTGCTTATGCCAAGAATGGAGAATTGGAGAAAGCTATTAGGTTGTTTTCTGATATGCAGGCATCGGGAATTAGACCGAACTCTGCTGTCTATATGAGCCTCTTGCAGTCTTGCTTGGGTCCTTCATTTCTAGAGCTTGGTAAACAGATACATTCCCATGTGATTAGAGCTCAGTTGAATGCCAATATTACAGTGGAAACAGCCATATGCAACATGTATGTGAGATGTGGGTGGTTAGAGGGGGCCAAGCTTGTTTTTGATGGGATGGATGCACAGAATGCTGTGACTTGGACTGGGTTGATGGTGGGTTACACTCAAGCCAAGAAGCTGGAGGTTGCTTTGGAACTGTTTGCTAGGATGGCAATGGAAGGCGTGGAATTGGATGAGTTTGTATTCTCTATTGTTCTCAAGGTGTGTTGCGGGCTGGAGGATTGGGATATGGGGAGGCAGATTCATAGTCACATTGTTAAACTTGGGGCCGAATCAGAAGTTTCAGTGGGGACTCCTCTTGTGGACTTCTATGTCAAATGTGGAGATATAGAATCTGCATATCGATCATTTGGGAGGATATCTGAACCAAATGATGTTTCATGGAGTGCTCTAATTTCGGGTTTTTCCCAATCTGGTAGGTTGGAGGATTGTATTAAGATCTTTACGTCTTTGAGGAGTGAAGGCGTGGTTTTAAATTCTTTCATATACACCAGTGTTTTTCAAGCCTGTGCGGCACAAGCAAACTTGAACATGGGCAGCCAAGCTCATGGGGATGCAATAAAAAGAGGTCTTGTTTCATACCTATATGGAGAGAGTGCAATGGTTACTATGTATTCAAAATGTGGGAGACTAGACTATGCTCGTCGGGCCTTTGAATCGATAGATGAGCCTGATGCTGTGGCTTGGACTGCTATAATTTCAGGTTATGCCTATCATGGCAATGCTGCAGAAGCTCTAGGGTTTTTCAGGAGGATGCAGAGTTATGGTGTTAGGCCAAATGCAGTTACCTTCATAGCAGTTTTAACTGCTTGTAGCCATTCGGGTTTAGTTGCAGAGGCCAAGCAGTACCTCGGCTCAATGAGCAGGGACTATGGTGTGAAGCCAACGATTGATCACTATGATTGTATGATTGATACATACTCTCGTGCTGGGCTGCTCCAGGAGGCACTTGAATTGATAAACAGGATGCCATTTGAACCCGACGCCATGAGCTGGAAGAGCTTACTGGGTGGGTGTTGGGCTCATTGCGACCTCAAGCTTGGAAAGATTGCAGCAGAAAACCTTTTTCGGTTGGACCCAGGAGACACCGCTGGCTACATTCTCCTGTTCAACTTGTATTCTGCCTTTGGAAAATGGGAAGAAGCAGGCCATGTTCGGAAACTGATGGCTGAAAGAGAGTTGAAGAAGGAGGTCAGCTGCAGCTGGATCTCAGTAAAAGGTCAAGTACACCGGTTTGTAGTTGGTGACAGGCACCATCCACAAACAGAAGCCATCTACTCAAAGCTAGAGGAATTCAAATGTTCTGTTATTGACAGCCCGGTTCGGCTCCTGAATGAGGAAGATGACGTTTCTTGCAGTCTGTCTGCGCGGAAGGAGCAGCTTCTTGACCACAGTGAGAAACTGGCTATTGCATTTGGGCTAATATCTACAGAAGACAATGCCCCCATTCTAGTTTTCAAGAACCTCCGGGCTTGCAGAGATTGCCATGAGTTTGGAAAGCAGGTGTCCATGGTGACAGGACGCCAGATTGTGGTTAGAGATTCCACCAGATTCCATCACTTCAAATCTGGGAAATGTTCTTGCAATGACTATTGGTGA 2289 45.22 MAGLPLPPPNPPPLSTRNQTSTSSSANFAQIPSWVSLKRSSSTIKTEKIQQGKLENLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21682874 21685163 - Vvi1g1289 Vvi1g1289 770489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1289 762 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 286 388 - -
Vvi1g1289 762 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 385 748 - -
Vvi1g1289 762 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 105 292 - -
Vvi1g1289 762 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1289 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vvi1g1289 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vvi1g1289 762 TIGRFAM PPR: pentatricopeptide repeat domain 154 187 IPR002885 -
Vvi1g1289 762 TIGRFAM PPR: pentatricopeptide repeat domain 530 554 IPR002885 -
Vvi1g1289 762 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Vvi1g1289 762 TIGRFAM PPR: pentatricopeptide repeat domain 457 491 IPR002885 -
Vvi1g1289 762 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Vvi1g1289 762 Pfam DYW family of nucleic acid deaminases 687 762 IPR032867 GO:0008270
Vvi1g1289 762 Pfam PPR repeat 61 80 IPR002885 -
Vvi1g1289 762 Pfam PPR repeat 356 386 IPR002885 -
Vvi1g1289 762 Pfam PPR repeat 530 553 IPR002885 -
Vvi1g1289 762 Gene3D Tetratricopeptide repeat domain 203 303 IPR011990 GO:0005515
Vvi1g1289 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi1g1289 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 292 - -
Vvi1g1289 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 286 388 - -
Vvi1g1289 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 385 748 - -
Vvi1g1289 762 Pfam E motif 572 633 IPR046848 -
Vvi1g1289 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Vvi1g1289 762 MobiDBLite consensus disorder prediction 1 27 - -
Vvi1g1289 762 Gene3D Tetratricopeptide repeat domain 429 627 IPR011990 GO:0005515
Vvi1g1289 762 Gene3D Tetratricopeptide repeat domain 56 202 IPR011990 GO:0005515
Vvi1g1289 762 Gene3D Tetratricopeptide repeat domain 304 424 IPR011990 GO:0005515
Vvi1g1289 762 Pfam PPR repeat family 454 502 IPR002885 -
Vvi1g1289 762 Pfam PPR repeat family 253 300 IPR002885 -
Vvi1g1289 762 Pfam PPR repeat family 151 198 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1289 - - - vvi:104880782 1526.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .