Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g129 ATGTTGGGTTTAGCCACCACTGCTACCGCTACCACCGCCACCGCAGCTCCGACCACCGCTGCGAAGAATCGCGTTCTCTGCAGCTCAGGAAGACTTCAGCGGTGGTTTCAGCGTTCTTCGGTCGCGTGCTATCGCATTTCTTCTCCATCGCTGCGGTCTAATTTCTGCGCAGTCAAGGCTATGGCGGAGGCGGACACCATTTCGATTCTGAAGGCTCAGTCTCAGTCCAATGCTTCGGGCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCCTTGGAAATGGCCTCCAAAGTTTAGGATATACAATTGTTTCAACTGGAGGAACAGCATCAGCTTTGGAAAATGCAGGGGTCTCTGTAACTAAAGTGGAACAGCTTACCTGTTTTCCAGAAATGCTTGATGGCCGTGTGAAAACTTTACATCCAAACATACATGGGGGTATTCTTGCTAGAAGAGACCAAAAGCTTCACATGGAAGCTCTTAATGAGCATGGAATTGGTACTTTTGACGTGGTGGTGGTGAACTTGTATCCATTTTATGATAAAGTTTCTTCTGGAGGAATTGAATTTGAAGATGGAATTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGAATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTCCTAGAATTTCTCCAAGGGAACCAGGATGACCAACTGTTCCGAAGAAAGCTTGCTTGGAAGGCTTTCCAACATGTTGCTTCTTATGATTCTGCAGTTTCAGAGTGGCTGTGGAAGCAGACTGTAGGAGACAAATTTCCTCCCAGTCTGACAGTTCCTCTCTCACTCAAAAGTTCTCTTCGTTATGGTGAAAACCCTCATCAAAAGGCTGCATTTTATGTTGACAAGAGTCTTTCTGAGGTTAATGCTGGTGGTATTGCTACTGCCATTCAACACCATGGAAAGGAGATGTCATATAATAACTATTTAGACGCTGATGCAGCTTGGAACTGTGTGTCAGAATTTAAGAACCCTACATGTGTGATAGTAAAGCATACAAATCCCTGTGGAGTAGCTTCACGTGATGACATCCTTGAAGCTTATAGATTAGCTGTGAAAGCAGATCCAGTGAGTGCATTTGGTGGTATCGTAGCCTTCAACATAGAAGTTGATGAGGCACTTGCAAAAGAAATCCGTGAGTTTAGGAGTCCAACTGATGGTGAAACACGGATGTTTTATGAGATTGTGGTTGCACCCAAGTATTCACAAAAGGGACTTGACATCCTCCGTGGAAAATCAAAAACTTTAAGAATTTTGGAAGCAGGCAAGAACGAGAAAGGAAAGCTTTCACTTCGACAAGTTGGTGGGGGTTGGTTAGCGCAGGATTCAGATGATTTAACCCCAGAAGATATCCCATTCAAATTAGTTTCTGAGAAGGCTCCTCCGGAAAGTGAGCTTCGCGATGCTGAGTTTGCATGGTTGTGTGTCAAGCATGTCAAGAGCAATGCCATTGTAATAGCAAAGAATAACTGCATGTTGGGTATGGGGAGTGGGCAGCCAAACCGCCGGGAGAGTTTGAGAATTGCAGTGAGGAAAGCTGGGGATGAGGTCAAAGGAGCTGCTTTGGCCAGTGATGCTTTCTTCCCATTTGCTTGGAAAGATGCGGTGGAAGAAGCATGCGAGAGTGGGATTGGTATCATTGCAGAGCCCGGAGGGAGCATCAGAGATGGAGATGCCATAGACTGCTGTAACAAATACGGGGTATCACTTCTTTTCACCAATGTGAGGCACTTCAGGCATTAA 1815 45.34 MLGLATTATATTATAAPTTAAKNRVLCSSGRLQRWFQRSSVACYRISSPSLRSNFCAVKAMAEADTISILKAQSQSNASGNKQALISLSDKKDLAFLGNGLQSLGYTIVSTGGTASALENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKLHMEALNEHGIGTFDVVVVNLYPFYDKVSSGGIEFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSQDYSALLEFLQGNQDDQLFRRKLAWKAFQHVASYDSAVSEWLWKQTVGDKFPPSLTVPLSLKSSLRYGENPHQKAAFYVDKSLSEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNIEVDEALAKEIREFRSPTDGETRMFYEIVVAPKYSQKGLDILRGKSKTLRILEAGKNEKGKLSLRQVGGGWLAQDSDDLTPEDIPFKLVSEKAPPESELRDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAVRKAGDEVKGAALASDAFFPFAWKDAVEEACESGIGIIAEPGGSIRDGDAIDCCNKYGVSLLFTNVRHFRH* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1248326 1254994 - Vvi1g129 Vvi1g129 769329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g129 604 PANTHER BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH 57 604 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 SUPERFAMILY Methylglyoxal synthase-like 82 271 IPR036914 -
Vvi1g129 604 Gene3D - 285 451 IPR024051 -
Vvi1g129 604 Hamap Bifunctional purine biosynthesis protein PurH [purH]. 81 604 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 Gene3D - 73 275 IPR036914 -
Vvi1g129 604 ProSiteProfiles MGS-like domain profile. 73 224 IPR011607 -
Vvi1g129 604 Pfam MGS-like domain 98 207 IPR011607 -
Vvi1g129 604 PANTHER AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN 57 604 - -
Vvi1g129 604 SMART aicarft_impchas 213 537 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 TIGRFAM purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 82 604 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 Pfam AICARFT/IMPCHase bienzyme 213 536 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 Gene3D - 471 604 IPR024051 -
Vvi1g129 604 CDD IMPCH 82 268 - -
Vvi1g129 604 PIRSF PurH 75 604 IPR002695 GO:0003937|GO:0004643|GO:0006164
Vvi1g129 604 SMART MGS_2a 93 208 IPR011607 -
Vvi1g129 604 SUPERFAMILY Cytidine deaminase-like 288 604 IPR016193 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g129 K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] - vvi:100245755 1190.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g129 . . . . . . . . . Cmo18g00249 . . . . . Cpe09g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006302 3 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 1 2 1 38