Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1290 ATGGGTGCTTCAAATCTGGGCTCGAATTCGCAGTTTCCGGCTACCCATTTGGCGGGAAACGGCGGGAATGCGGCCACCGGTGGGTTTAATCCATCGGGTTTTGAGGGTTTTGTGGGGAGTTCTCTGTTTGTGGACAGGTGTAAGGTGTTGAAACCGCTCGAGAACTTCCCTTCAGTTGGGTCACAGCCCACGCTGTTCCAGAAGAGAGCGATTCTCCGGCGAAATTCGACAGAAAGAGCGGGGAATTATGGAGGTAAGAGGCCGACTGCAAATGATGGTGGAGACAACTCAAATTTGAATGGATCTTCCATTGGAGGAGATCGAAAAGGGAAGAAAAAGGGGCTGCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGAAAGAAGCTGAACGATAGGCTCTACATGCTGAGGTCTGTTGTTCCAAAGATCAGCAAGATGGATAGAGCTTCAATCCTGGCGGATGCTATTGAGTACTTGAAGGAGTTACTGCAGAGGATCAACGACCTCCAGAATGAACTGGAGTCTATCACACCTCAATCTTTATTGCAGCCTACTTCAAGTTTCCAGCCATTGACACCAACTATTCCAACCTTGCCCTGCCGTGTTAGGGAGGAAATCTGCCCGGGCTCATTGCCAAGTCCTAATAGTCAGCCAAGGGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCCTTGGGCTAGACGTTCAACAGGCGGTCATCAGCTGTTTCAATGGGTTTGCTCTGGATATCTTCCAAGCTGAGCAATCCAAGGAAGGTTTGGAGGTCCTGCCTGAGCAAATTAAAGCTGTACTTTTGAACATAGCCGGCTTCCATGGTGTGATGTAG 915 50.27 MGASNLGSNSQFPATHLAGNGGNAATGGFNPSGFEGFVGSSLFVDRCKVLKPLENFPSVGSQPTLFQKRAILRRNSTERAGNYGGKRPTANDGGDNSNLNGSSIGGDRKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILADAIEYLKELLQRINDLQNELESITPQSLLQPTSSFQPLTPTIPTLPCRVREEICPGSLPSPNSQPRVEVRQREGGAVNIHMFCARRPGLLLSAMRALDGLGLDVQQAVISCFNGFALDIFQAEQSKEGLEVLPEQIKAVLLNIAGFHGVM* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21696689 21699186 + Vvi1g1290 Vvi1g1290 770490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1290 304 Coils Coil 153 180 - -
Vvi1g1290 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Vvi1g1290 304 Gene3D - 108 180 IPR036638 GO:0046983
Vvi1g1290 304 PANTHER BHLH TRANSCRIPTIONAL FACTOR 86 304 - -
Vvi1g1290 304 PANTHER BHLH TRANSCRIPTIONAL FACTOR 1 79 - -
Vvi1g1290 304 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 86 304 - -
Vvi1g1290 304 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 79 - -
Vvi1g1290 304 Pfam Helix-loop-helix DNA-binding domain 121 163 IPR011598 GO:0046983
Vvi1g1290 304 CDD ACT_UUR-ACR-like 233 293 - -
Vvi1g1290 304 CDD bHLH_AtAMS_like 117 181 - -
Vvi1g1290 304 MobiDBLite consensus disorder prediction 76 120 - -
Vvi1g1290 304 ProSiteProfiles ACT domain profile. 232 304 IPR002912 -
Vvi1g1290 304 MobiDBLite consensus disorder prediction 106 120 - -
Vvi1g1290 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 184 IPR036638 GO:0046983
Vvi1g1290 304 SUPERFAMILY ACT-like 231 299 IPR045865 -
Vvi1g1290 304 SMART finulus 120 169 IPR011598 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14479 PF00010 HLH 1.00E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1290 - - vvi:100245461 540.421