Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1291 ATGAAGTTTGGTGGATCTTCGCTGGCTTCGGCTGAGAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGGCTGGAGAGAAGGCTGTGAGTTGCGGTGTTTCTAATGCATCCGAAATTGATGAGCTGAGTTTGGTAAAGGAACTGCATCTAAGGACTGTACAAGAGCTTGGGCTTGATAGTTCTGTTATTTCTGGACATTTAGAAGAATTGGAGCAACTTCTGAAGGGAATAGCCATGATGAAAGAGCTGACATTCCGCACAACAGACTATTTAGTTTCATTTGGAGAGTGCATGTCCACAAGAATTTTTGCAGCCTATTTGAATAAAATTGGTGCTAAAGCACGCCAATATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGGGTTGGAAATCTGGTGCAGTTACTACCTTGGGTAGGGGTGGGAGTGATTTGACAGCCACAGCCATTGGTAGAGCCTTAGGCTTGCAAGAGATTCAGGTGTGGAAGGATGTCGATGGGGTTTTGACTTGCGATCCAAGTATTTATCCACGTGCATTGCCTGTACCATATTTGACATTTGATGAGGCAGCTGAGCTTGCATACTTTGGTGCCCAGGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATAAGACAAGAGATATGAGCAAGGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAGGTTTTTTCTATCTTTGAAGATTTGGGTATATCTGTGGATGTTGTTGCTACCAGTGAAGTCAGTATATCTTTGACTTTGGATCCATCAAAACTTTGGAGCCGGGAACTTATTCAGCAGGAACTTGACCATGTAGTGGAAGAGCTTGAGAAAATTGCAGTCGTGAATCTCCTACAACACAGATCAATCATCTCCCTCATTGGGAATATTCAGCGTTCTTCTCTGATTCTTGAGAAGGCATTCAATGTTCTCCGAACCATTGGAGTGAATGTCCAGATGATCTCCCAAGGGGCATCCAAGGTCAACATCTCATTGATAGTAAATGATAGTGAAGCAGAACAATGTGTGAAGGCCCTTCACCATGCTTTCTTCGAGATTGGTGATCTTTTCGAACTGATGATCCTGGATGGTGGCGTCGAGAATGGCTCAGCTTTGCCTTTGACAGTAGAAAATCAACTATGA 1449 43.48 MKFGGSSLASAERMREVADLVLQFRDERPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIDELSLVKELHLRTVQELGLDSSVISGHLEELEQLLKGIAMMKELTFRTTDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYNDWINDPAIPIVTGFLGKGWKSGAVTTLGRGGSDLTATAIGRALGLQEIQVWKDVDGVLTCDPSIYPRALPVPYLTFDEAAELAYFGAQVLHPQAMRPARESDIPVRVKNSYNPEAPGTLINKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLQHRSIISLIGNIQRSSLILEKAFNVLRTIGVNVQMISQGASKVNISLIVNDSEAEQCVKALHHAFFEIGDLFELMILDGGVENGSALPLTVENQL* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21705191 21716307 + Vvi1g1291 Vvi1g1291 770491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1291 482 PANTHER ASPARTOKINASE 1 472 - -
Vvi1g1291 482 Pfam Amino acid kinase family 1 280 IPR001048 -
Vvi1g1291 482 Gene3D - 312 387 - -
Vvi1g1291 482 PANTHER ASPARTATE KINASE 1 472 - -
Vvi1g1291 482 SUPERFAMILY ACT-like 391 457 IPR045865 -
Vvi1g1291 482 PIRSF Asp_kin 1 457 IPR005260 GO:0004072|GO:0009089
Vvi1g1291 482 Gene3D Aspartokinase, catalytic domain 37 133 IPR042199 -
Vvi1g1291 482 Gene3D - 1 291 IPR036393 -
Vvi1g1291 482 TIGRFAM asp_kinases: aspartate kinase 1 454 IPR001341 GO:0004072|GO:0008652
Vvi1g1291 482 CDD ACT_AK1-AT_1 311 388 - -
Vvi1g1291 482 SUPERFAMILY ACT-like 300 398 IPR045865 -
Vvi1g1291 482 ProSiteProfiles ACT domain profile. 316 394 IPR002912 -
Vvi1g1291 482 CDD AAK_AK-LysC-like 1 291 IPR041746 -
Vvi1g1291 482 Gene3D - 303 453 - -
Vvi1g1291 482 SUPERFAMILY Carbamate kinase-like 1 293 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1291 K00928 lysC; aspartate kinase [EC:2.7.2.4] - vvi:100267777 931.013
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1291 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004617 2 2 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 2 42