Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1292 ATGGATTTTGTTGACTCTGAAGATGCTCTCTACAAGGAGCTCTGGCATGCTTGTGCTGGGCCTCTTGTGACGGTGCCTCGCGTAGGGGAGCGAGTTTTCTACTTTCCTCAGGGTCATCTGGAGCAGGTGGAGGCGTCAACTAATCAGGTGGCTGACCAACAGATGCCGGCTTATGATCTTAGAGCGAAAATCCTTTGCCGTGTGATTAATGTTCATTTGAAGGCTGAATCGGACACTGACGAAGTGTTTGCTCAAGTGACTTTGCTTCCCGAACCTAAGCAAGATGAAAACTCCGCGGAGAAAGAGGATGTGCTTACTCCCACTCCTCGACCTCGTGTACACTCCTTCTGTAAGACCCTTACTGCCTCAGATACAAGCACTCATGGTGGCTTCTCAGTGTTGAGGAGGCATGCTGATGAGTGCCTACCTCCACTGGACATGTCCAAGCAACCTCCGACCCAGGAGTTGGTAGCCAAGGATTTGCATGGAAATGAGTGGCGATTCCGCCACATTTTTCGAGGTCAACCAAGGAGGCACCTTCTTCAAAGTGGTTGGAGTCTTTTTGTCAGTTCCAAAAAGCTTGTTGCAGGGGATGCTTTTATTTTCCTCAGAGGTGAAAATGGGGAACTTCGTGTAGGGGTAAGGCGTGCTATGAGGCAACTAAGCAATGGCCCATCTTCAGTCATATCTAGTCACAGTATGCATCTTGGTGTTCTTGCTACAGCTTGGCATGCAGTCTCTACGGGTACAATATTCACCGTCTATTACAAACCAAGGACTAGTCCTGCTGAGTTTATTATTCCATTTGATCAATACATGGAGGCTGTCAAGAATCACTATTCTATTGGAATGAGATTCAAAATGAAGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTTCACTGGTACTGTTATTGGAACTGAAGATGCAGATCCCATGAGGTGGCCTGGATCAAAATGGAGATGCCTCAAGGTTCGGTGGGATGAAACCTCTTCTGTTCCTCGTCCAGAGTGTGTTTCCCCCTGGAACATAGAAGTTGCTTTGACACCTCCTTCTCTGAATCCACTTCCAGTTTCACGATCAAAGAGGCCCCGTGCAAACATGATGTCATCATCTACTGAATCCTCTGTTCTTACAAGGGAAGGTTTGTCTAAAGTCACCATAGACCATTCGCCAGGAAGTGGGTTTTCAAGAGCCTTGCAAGGTCAAGAAATCTCAACCTTGAGGGGCATTTTCATGGAGAATAACAATGATTTGGTCACTACTCAAAAATCCATTGTACAGCCACGATCACAAGTTGTTGACCAGATGGACTCAGCTTCTACTAAGAGAAGTTTTATGTCAGAGGACTGGGTTCCTCAGCTGAGACAGGGGGTGCAGTGTGCAAATCTAATTTCAGGTCCTCAGTCCATGATGCACTCAAGTACCGTGTTAAACATGGAGTCTAATGTGAAACTTTCTGAAGGAGCCAAAGGGAAACCATATCCGACTCCTGCAAATGTCAGATACAGTGGCTTTAGTGGGTATGGTGGATTACATGACCTTGGAGCTGAGCAGTGTCCTGGAAACTGGTTGTTGCCCCTGCTTCCACATTCATATTCTGAAACTACACCTCATCTCATGGGGTTAAAGCCACAGCCTCTGTATGTACAAGAAGAGGTGGTGAAATCCAAAGGAGATGGAAACTGCAAACTCTTTGGCATCTCCCTCATCAGCAAACCTGCTGCAAATCCCATGCATAGACCACAAGGGGAAATCCAACTTACAATGGAAAACCCAGCCCGACATCCAGAGCAATCAAAGAGTTCAAAGTACATGGAGATAGGAGGTTTTGAGCATGAGAAACCTTTCCAAGCTTTGGAACAGCAGCTTTCAAGAGATGATCAAAGCAAACTTCATTCTGGTTCAACTAGGAGTTGCATCAAGGTTCACAAGCAGGGAATTGCCGTAGGGAGATCCGTGGACCTCACCAAGTTTAATGGTTACACTGAACTAATATCTGAATTGGATCAGATTTTTGAATTCAATGGTGAATTAATATCTCTCAACAAAGATTGGTTGATTGTTTTTACTGATGACGAGGGTGACATGATGCTTGTTGGAGATGATCCCTGGCCGGAGTTTTGCAGCATGGTGCGCAAAATCTTTGTCTACACCCGAGAGGAGATTCAGAGGATGGACCCAAGACCCCTGAATCCTAAGAGTTGGAGACATCCCTCAGCAGTGAGTCTCTGGGGCAGGGCAAGTCTGCCTGAATTGACCATGGAGCATTTATTTGTTACATCTGGTTGTGAAGGCAGTTGA 2304 46.18 MDFVDSEDALYKELWHACAGPLVTVPRVGERVFYFPQGHLEQVEASTNQVADQQMPAYDLRAKILCRVINVHLKAESDTDEVFAQVTLLPEPKQDENSAEKEDVLTPTPRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFLRGENGELRVGVRRAMRQLSNGPSSVISSHSMHLGVLATAWHAVSTGTIFTVYYKPRTSPAEFIIPFDQYMEAVKNHYSIGMRFKMKFEGEEAPEQRFTGTVIGTEDADPMRWPGSKWRCLKVRWDETSSVPRPECVSPWNIEVALTPPSLNPLPVSRSKRPRANMMSSSTESSVLTREGLSKVTIDHSPGSGFSRALQGQEISTLRGIFMENNNDLVTTQKSIVQPRSQVVDQMDSASTKRSFMSEDWVPQLRQGVQCANLISGPQSMMHSSTVLNMESNVKLSEGAKGKPYPTPANVRYSGFSGYGGLHDLGAEQCPGNWLLPLLPHSYSETTPHLMGLKPQPLYVQEEVVKSKGDGNCKLFGISLISKPAANPMHRPQGEIQLTMENPARHPEQSKSSKYMEIGGFEHEKPFQALEQQLSRDDQSKLHSGSTRSCIKVHKQGIAVGRSVDLTKFNGYTELISELDQIFEFNGELISLNKDWLIVFTDDEGDMMLVGDDPWPEFCSMVRKIFVYTREEIQRMDPRPLNPKSWRHPSAVSLWGRASLPELTMEHLFVTSGCEGS* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21717510 21724801 - Vvi1g1292 Vvi1g1292 770492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1292 767 Pfam AUX/IAA family 684 728 IPR033389 -
Vvi1g1292 767 SUPERFAMILY CAD & PB1 domains 636 715 - -
Vvi1g1292 767 SUPERFAMILY DNA-binding pseudobarrel domain 105 245 IPR015300 -
Vvi1g1292 767 Gene3D - 279 349 - -
Vvi1g1292 767 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Vvi1g1292 767 ProSiteProfiles PB1 domain profile. 638 731 IPR000270 GO:0005515
Vvi1g1292 767 CDD B3_DNA 114 216 IPR003340 GO:0003677
Vvi1g1292 767 MobiDBLite consensus disorder prediction 364 378 - -
Vvi1g1292 767 Gene3D - 113 218 IPR015300 -
Vvi1g1292 767 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Vvi1g1292 767 SMART B3_2 116 218 IPR003340 GO:0003677
Vvi1g1292 767 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 742 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi1g1292 767 Gene3D - 634 727 - -
Vvi1g1292 767 PANTHER AUXIN RESPONSE FACTOR 5 742 - -
Vvi1g1292 767 MobiDBLite consensus disorder prediction 355 378 - -
Vvi1g1292 767 Pfam Auxin response factor 242 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14480 PF02362 B3 2.50E-21 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1292 - - vvi:100250592 1504.19