Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1298 ATGTCGACCCTTTCTTCTTCTCACTGTAGTGCTTCATATTCTTCAACCTCCAATGCCCGTCGTCAACGCTCAACAAAGCTCTCTTCGATTCCTAAGCGGTTTGTTCCTGTGAAATCAGCCAGAAACTCCTACCAGAATGTGGTTCTTTTGCAAGATGGTGCAGTATCATCCACAATGGCCCCTATTGAAAATGATTCCACTTTGAAGAAATTGAAAGATGGGTTGTTATCAGCCACATCTTCAGAGGAATGTGAAGATGTGGTGGGCTTTGATGGTAATGACAAGAACTCAACTGTCAGCATTACTGTGGTTGGAGCCTCTGGAGACCTGGCCAAAAAGAAGATATTTCCTGCACTTTTCGCACTTTTTTATGAGGATTGCCTACCTGAGCACTTTACCGTGTTTGGTTATGCTCGGAGTAAGATGACTGATGCAGAACTTAGAAACATGGTTAGCAAGACACTTACTTGCAGAATTGATAAGAGGGAGAACTGTGGTGAAAAGATGGAGCAATTCCTTAAAAGATGTTTTTACCATTCTGGTCAGTATGATTCTGAGGACAACTTTACAGAGCTGGACAAGAAGCTGAAGGAACACGAGGCTGGAAGGGTCTCCAATCGCCTGTTCTATTTATCAATCCCACCGAATATTTTCATAGATGCTGTAAAATGTGCAAGCTTGTCAGCTTCCTCTGCTAATGGCTGGACGAGGGTCATTGTTGAGAAACCTTTTGGACGGGATTCAGAATCATCAGCTGCTTTGACAAATGGCCTCAAGCAGTACTTAGCAGAGGATCAAATTTTCAGGATAGACCACTATCTTGGGAAGGAGCTGGTGGAAAACTTATCTGTTCTCCGATTCTCCAACCTCATTTTTGAACCTTTGTGGTCAAGGCAATATATAAGGAATGTGCAGTTTATATTCTCTGAAGATTTTGGCACGGAAGGACGTGGGGGGTACTTTGACAATTATGGGATAATAAGGGACATAATGCAGAATCATCTGCTTCAAATACTCGCCCTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGATATCAGAAATGAGAAGGTTAAAGTTCTTCGCTCAATGAGGCCTCTACAACTTGAGGATGTGGTTATAGGGCAGTACAAGAGCCATACAAAAGGAGGTGTTACATACCCAGCCTACACTGATGACAAGACTGTGCCCAAAGACAGCCTAACCCCAACATTTGCTGCTGCTGCCCTCTTTATAGATAATGCCAGATGGGATGGGGTTCCATTTCTAATGAAAGCTGGTAAAGCATTGCATACTAAGGGGGCTGAGATAAGGGTACAGTTTAGGCATGTGCCTGGTAACTTATATAACCGGAATTTTGGGACAGATCTTGATAGAGCAACAAATGAGCTTGTCATAAGAGTGCAGCCTGATGAAGCTATTTATTTGAAAATCAACAACAAAGTCCCTGGTTTGGGAATGAGATTGGACCGTAGTAATCTAAATCTTCACTATGCAGCCAGGTACTCAAAGGAGATTCCAGATGCATATGAGAGGCTTCTACTAGATGCCATAGAAGGCGAAAGGAGACTATTTATAAGGAGTGATGAACTTGATGCCGCATGGGCACTCTTCACACCTCTATTGAAAGAGCTGGAAGAGAAGAAGATTATTCCCGAGTACTATCCCCATGGGAGCCGAGGTCCGGTTGGGGCTCACTATCTTGCAGCCAGATACAATGTCCGGTGGGGCGATCTCAGCATAGAGCAATAA 1758 43.69 MSTLSSSHCSASYSSTSNARRQRSTKLSSIPKRFVPVKSARNSYQNVVLLQDGAVSSTMAPIENDSTLKKLKDGLLSATSSEECEDVVGFDGNDKNSTVSITVVGASGDLAKKKIFPALFALFYEDCLPEHFTVFGYARSKMTDAELRNMVSKTLTCRIDKRENCGEKMEQFLKRCFYHSGQYDSEDNFTELDKKLKEHEAGRVSNRLFYLSIPPNIFIDAVKCASLSASSANGWTRVIVEKPFGRDSESSAALTNGLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDVVIGQYKSHTKGGVTYPAYTDDKTVPKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTKGAEIRVQFRHVPGNLYNRNFGTDLDRATNELVIRVQPDEAIYLKINNKVPGLGMRLDRSNLNLHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIIPEYYPHGSRGPVGAHYLAARYNVRWGDLSIEQ* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21855815 21861685 + Vvi1g1298 Vvi1g1298 770498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1298 585 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 10 585 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 Gene3D Dihydrodipicolinate Reductase; domain 2 270 579 - -
Vvi1g1298 585 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 284 578 IPR022675 GO:0004345|GO:0006006|GO:0050661
Vvi1g1298 585 Gene3D - 95 269 - -
Vvi1g1298 585 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 98 580 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 95 284 IPR036291 -
Vvi1g1298 585 PIRSF G6PD 77 582 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PRINTS Glucose-6-phosphate dehydrogenase signature 237 250 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PRINTS Glucose-6-phosphate dehydrogenase signature 261 289 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PRINTS Glucose-6-phosphate dehydrogenase signature 313 330 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PRINTS Glucose-6-phosphate dehydrogenase signature 331 347 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PRINTS Glucose-6-phosphate dehydrogenase signature 418 444 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 103 281 IPR022674 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 271 578 - -
Vvi1g1298 585 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g1298 585 TIGRFAM zwf: glucose-6-phosphate dehydrogenase 99 579 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vvi1g1298 585 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 2, CHLOROPLASTIC 10 585 - -
Vvi1g1298 585 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 271 277 IPR019796 GO:0004345|GO:0006006
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1298 K00036 G6PD, zwf; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] - vvi:100267681 1135.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00197 . . . Bpe14g00802 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003812 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 2 1 1 1 1 5 2 2 44