Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1299 ATGGCGGGAAAAGTCGTCCTCATCACAGGCGCCTCCTCAGGAATCGGAGAGCAAATGGCTTACGAATATGCAAAGAAAGGAGCTTGTTTAGTGATAGTTGCGAGAAGGAAGAAGAAGCTAGAGGAGGTGGCAGCACAGGCTCGGGAGCTCGGCTCCCCTGATGTTGTTGTTGTTTGCGGTGATGTTTCTAATATCAATGAATGCAAGCAATTTATTGATGAAGCTATCCACCACTTTGGTAGATTGGATCATCTGGTGAATAATGCTGGAGTTACTGGCGGCTACCCATTTGAAGAGATCACAGATATTACAAAATTTGCACTTCTAATGGATGTGAATTTCTGGGGCACTGTTTATCCAACTTATTTTGCAATTCCTCACCTCAGGAAGACCAAGGGCAAGATTTTTGTTAACTCATCTTCTTGTGCATTTCTGCAGCCACCAAGATTGAGTTTCTACAGTGCAAGTAAAGCAGCATTAATAGGCTTCTTTGAGGCACTGAGAATTGAGCTGGCTCCTTCAGTCACCATAACAATTGCCACTCTTGGTATAATAGATTCCGAGATGTCCCGGGGAAAAATCTTATCCAAGGATGGAGAACTCATACTATCCCCAGAAAACAGCAAAGGTGTTTTTGAGGGATTCCCAGTGATGAACACTGAGCCAGCTACTAAGTCCATTGTCGATAGTATCTGCCGAGGAGAAAGGTATGTGACTGAGCCACAATGGTACGGAGCGATCCATCTGCTCAAAGATTTATGCCCAGAAATGGTGGAATGGTACTATAGCATCATGTACTTTAAGAAGAAATCGAGCCTATTTGCAGAAAAAGCAGACTGA 840 43.81 MAGKVVLITGASSGIGEQMAYEYAKKGACLVIVARRKKKLEEVAAQARELGSPDVVVVCGDVSNINECKQFIDEAIHHFGRLDHLVNNAGVTGGYPFEEITDITKFALLMDVNFWGTVYPTYFAIPHLRKTKGKIFVNSSSCAFLQPPRLSFYSASKAALIGFFEALRIELAPSVTITIATLGIIDSEMSRGKILSKDGELILSPENSKGVFEGFPVMNTEPATKSIVDSICRGERYVTEPQWYGAIHLLKDLCPEMVEWYYSIMYFKKKSSLFAEKAD* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21864294 21867415 + Vvi1g1299 Vvi1g1299 770499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1299 279 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 - -
Vvi1g1299 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 140 168 IPR020904 GO:0016491
Vvi1g1299 279 PRINTS Glucose/ribitol dehydrogenase family signature 5 22 IPR002347 -
Vvi1g1299 279 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Vvi1g1299 279 PRINTS Glucose/ribitol dehydrogenase family signature 127 143 IPR002347 -
Vvi1g1299 279 PRINTS Glucose/ribitol dehydrogenase family signature 153 172 IPR002347 -
Vvi1g1299 279 PRINTS Glucose/ribitol dehydrogenase family signature 173 190 IPR002347 -
Vvi1g1299 279 PANTHER RETINOL DEHYDROGENASE-RELATED 1 271 - -
Vvi1g1299 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Vvi1g1299 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 IPR002347 -
Vvi1g1299 279 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 271 - -
Vvi1g1299 279 Gene3D - 1 273 - -
Vvi1g1299 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 269 IPR036291 -
Vvi1g1299 279 Pfam short chain dehydrogenase 4 191 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1299 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - vvi:100245367 560.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1299 Vvi17g78 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93