Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1300 ATGTATCAAGTTTATTCAAATCAAGAAAACCTACCTATATCGTCGTATCATCGTAACTTGTACTTGCCATCTCTAAAAGGTTTAGCCTGCGCCCCTCAAATCACTCTCTCATCAGCCATGGAACTCGACCATCTTCTTCACAAGGCCATCAACTTGGTGCTGACGCCTTTAGTTTTCGCCATTATATGTCTCATCCTACCCTTTCTCATCATTTTCCGACTGGTTGTTTCCATCTCCAGTCGCTTCTCCAGCGAGAACATGGCCAGAAAAGTTGTCCTCATCACCGGTGCTTCATCGGGAATCGGAGAGCATATGGCTTATGAATATGCGAAAATGGGAGCGTGTCTAGCGCTAGTTGCGAGAAGGAAGGAGAAGCTGGAAGCGGTTGCAGCCAGGGCTCGTGGCCTCGGCTCTCCTGATGTTCTTGCGCTTCGTGCCGATGTATCAAATGTTAATGACTGCAAGCGATCTATTGATGATACTATCAACCACTTTGGTAAACTGAATCATTTGGTGAACAATGCCGGGATTGGAAGTGTCTGTGCACTTGAAGAGATCACCGATATTACCAACTCAGGATCTTTGATGGATGTGAACTACTGGGGTTCTGTTTATCCAACTTACTTTGCAATTCCTCACCTGAGAAAGACTAAGGGCAAGATTGTTGTCAACTCATCTACTAGTGCCCTTGTGCAGCCTCCATCAATGAGCTTCTATACTTCGAGCAAAGCGGCGGTGATAGGCTTCTTTGAGTCCTTGAGAGGTGAATTAGATCCTGAGGTGACAGTATCGATAGTAACTCTCGGCTTTGTAGAGAGTGAGATGACCGAAGGGAAGCTCGTATCCGGGAATGGAGAAGTCATAGTAGCACCAAACCTGATAAAAGCTATTAGTCCTACAGGTCTGCCGAAAATGAGAGCGGGTCTAGCTGCAAAGGTGATTGTAGATGCCATATGCCGTGGAGAAAGATATGTGACTGAGCCAAAGTGGTATAGGATGCTTACGTTATTCAAATACTTATGCCCTGAAGTGATTGAATGGCATTTCCGCCAGACCAAATTTGGGAAGGTGAAAGAAGCTCCCTCCAACCATATTCCCTCTAAAGCCGACTAG 1113 45.82 MYQVYSNQENLPISSYHRNLYLPSLKGLACAPQITLSSAMELDHLLHKAINLVLTPLVFAIICLILPFLIIFRLVVSISSRFSSENMARKVVLITGASSGIGEHMAYEYAKMGACLALVARRKEKLEAVAARARGLGSPDVLALRADVSNVNDCKRSIDDTINHFGKLNHLVNNAGIGSVCALEEITDITNSGSLMDVNYWGSVYPTYFAIPHLRKTKGKIVVNSSTSALVQPPSMSFYTSSKAAVIGFFESLRGELDPEVTVSIVTLGFVESEMTEGKLVSGNGEVIVAPNLIKAISPTGLPKMRAGLAAKVIVDAICRGERYVTEPKWYRMLTLFKYLCPEVIEWHFRQTKFGKVKEAPSNHIPSKAD* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21867974 21876241 + Vvi1g1300 Vvi1g1300 770500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1300 370 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 177 IPR002347 -
Vvi1g1300 370 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 227 IPR002347 -
Vvi1g1300 370 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 239 258 IPR002347 -
Vvi1g1300 370 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 226 254 IPR020904 GO:0016491
Vvi1g1300 370 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 87 363 - -
Vvi1g1300 370 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 351 IPR036291 -
Vvi1g1300 370 PANTHER RETINOL DEHYDROGENASE-RELATED 87 363 - -
Vvi1g1300 370 Gene3D - 73 358 - -
Vvi1g1300 370 PRINTS Glucose/ribitol dehydrogenase family signature 91 108 IPR002347 -
Vvi1g1300 370 PRINTS Glucose/ribitol dehydrogenase family signature 166 177 IPR002347 -
Vvi1g1300 370 PRINTS Glucose/ribitol dehydrogenase family signature 213 229 IPR002347 -
Vvi1g1300 370 PRINTS Glucose/ribitol dehydrogenase family signature 239 258 IPR002347 -
Vvi1g1300 370 PRINTS Glucose/ribitol dehydrogenase family signature 259 276 IPR002347 -
Vvi1g1300 370 Pfam short chain dehydrogenase 90 277 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1300 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - vvi:100854734 640.958
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1300 Vvi17g77 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1300 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93