Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1301 ATGGATTGCTGGTCTCCCTCTCTCACTGTTGATGATGAATTTGAGAAGCTCGTGATTCGAATGAACCCTCCGAGGGTTACTGTTGATAATGCATCAAGCAGGACAGCCACTTTGATTAAGGTCGATAGTGCGAATAGGCGTGGGAGTTTGTTGGAGGTGGTTCAGGTTCTGAATGATATGGATCTTATTATTAGAAGAGCTTACATTTCTTCAGATGGGGAATGGTTTATGGACGTATTTCATGTGACAGATCAAAAAGGCAATAAGCTCTCTGAAGATGATGTTGCTGAAAGAATTCAACAGTCACTCGGACCTAGAGCACGGAGCTTCCGTTCCTTGAGAAGGTCCGTGGGTGTCCAAGCTGCTAATGAACATACAACCATAGAATTGACAGGGCGAGACCGACCAGGCTTGCTTTCAGAGGTGTTTGCGGTTCTTGCTGACCTCAAATGCAATGTGGTAGCAGCAGAAGTTTGGACCCATAATTCAAGAATGGCATCGGTTGTTTACATCACTGATGATGAGACTGGATTGCCAATTGATGATCCTGATCGGCTTGTGAAGATCAAACAGCTTCTCCTTTATGTGCTAAAAGGAGATAGAGATAAGCGGAGTGCCAATACTGCTGTTTCAGTGGGTTCCACTAACACGCAGAGGAGGCTGCATCAAATGATGTATGCTGATCGTGATTATGATATGGATAGTGGTTCCACAAATGATCGGAGCAAACCCCTTGTAACCGTGGAGAATTTTGCAGATAAGGGCTACACTGTCGTGAACCTAAGGTGCCCAGACCGGCCTAAGCTTCTCTTTGATACCGTCTGCACATTGACTGATATGCAGTATGTGGTATTCCATGCAACTGTCATTGCTGAAGGACCAGAGGCTTATCAGGAATATTATATCAGGCATGTGGATGGGTGCCCCATCAGTTCTGAAGCAGAGCAGCAAAGGGTAATTCTTTGCCTCGAGGCTGCTATCAGGAGACGTACTTCTGAGGGTATAAGACTAGAACTCTGTAGTGAAGACAGAGTTGGACTACTCTCTGATGTAACTCGCATATTTAGAGAAAACGGTCTATCCGTCACTCGAGCTGAGGTCACTACCAGGGGTTCTCAAGCTGTGAATGCTTTCTATGTCACTGATTCATCAGGAAATCCAGTAAAGAGTGAAACAATTGAGGCAGTCCGCAAAGAGATTGGCCTGACAATACTTCGTGTTAAAGATGATGCCTACTCCAAATCTCCACCCCAGGAGAGTGGGAGGTTCTCGTTGGGTAATCTCTTCCGATCAAGATCAGAGAAGGTCCTTTACAACTTGGGCTTAATGAGGTCATATTCTTGA 1344 45.31 MDCWSPSLTVDDEFEKLVIRMNPPRVTVDNASSRTATLIKVDSANRRGSLLEVVQVLNDMDLIIRRAYISSDGEWFMDVFHVTDQKGNKLSEDDVAERIQQSLGPRARSFRSLRRSVGVQAANEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDDETGLPIDDPDRLVKIKQLLLYVLKGDRDKRSANTAVSVGSTNTQRRLHQMMYADRDYDMDSGSTNDRSKPLVTVENFADKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVFHATVIAEGPEAYQEYYIRHVDGCPISSEAEQQRVILCLEAAIRRRTSEGIRLELCSEDRVGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNAFYVTDSSGNPVKSETIEAVRKEIGLTILRVKDDAYSKSPPQESGRFSLGNLFRSRSEKVLYNLGLMRSYS* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21888058 21891236 + Vvi1g1301 Vvi1g1301 770501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1301 447 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 445 IPR040217 -
Vvi1g1301 447 CDD ACT_ACR_4 334 405 - -
Vvi1g1301 447 CDD ACT_ACR_2 126 199 - -
Vvi1g1301 447 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Vvi1g1301 447 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Vvi1g1301 447 SUPERFAMILY ACT-like 123 182 IPR045865 -
Vvi1g1301 447 Pfam ACT domain 126 175 IPR002912 -
Vvi1g1301 447 Pfam ACT domain 337 399 IPR002912 -
Vvi1g1301 447 ProSiteProfiles ACT domain profile. 336 415 IPR002912 -
Vvi1g1301 447 SUPERFAMILY ACT-like 34 105 IPR045865 -
Vvi1g1301 447 CDD ACT_ACR_3 256 330 - -
Vvi1g1301 447 Gene3D - 333 409 - -
Vvi1g1301 447 Gene3D - 121 192 - -
Vvi1g1301 447 PANTHER OS08G0515400 PROTEIN 1 445 - -
Vvi1g1301 447 SUPERFAMILY ACT-like 332 401 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1301 - - - vvi:100250497 880.167
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1301 Vvi17g73 ECH
Vvi1g1301 Vvi14g1142 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1301 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00179 Cam06g0032 Cec06g0198 Cco06g0193 Clacu06g0195 Cmu06g0189 Cre06g0961 . . . . . Csa04g00296 Chy11g01810 Cme11g02343 . Blo12g00284 . . . . . . Sed12g0612 . . . . . . Cpe17g00924 Cpe03g01219 Bhi12g02421 Tan06g1481 Cmetu07g0215 . . . . . . . . . . . Lsi09g01746 . Chy07g01484 Cme07g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001695 2 3 2 3 2 2 3 2 2 2 2 2 3 3 2 3 2 2 3 2 1 2 2 2 2 2 2 6 3 1 70