Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1302 ATGGCGGCTTCACTCACTACCCTGTCAAACGTCGGCTCGCTCTCGAGTCCACGGAGCGTCGCGCAGATCAAGGCTCTCGGCCCCACCTGTAACGCTCTGAAGCTTCCAAGATCTCCGTTCCCTTCGAATGTGTCGTCTTCGTCGTCGTCGAGCTTCGTCTCTGGCTCGTTTCGTCTGGTGCCTCTCACATCTTCGTTGAATCCTTGTTCTCGGAGAAGAACTGGTCTTCTTAGTTCGCTTAGAGCCTCTGCGCAGGAAGCACCATTACAATCAAAAGTAACACAAAAGGTATATTTTGATATAAGCATTGGAAACCCAGTTGGGAAGGTTGTTGGACGGATTGTGATTGGATTATTTGGTGACGATGTGCCTCAAACAGCAGAGAACTTCCGTGCGCTTTGCACAGGAGAAAAGGGCTTTGGATATAAAGGTTCTACATTCCATCGGGTCATCAAGGATTTCATGATTCAGGGTGGAGACTTTGACAAAGGAAATGGAACTGGAGGTAAAAGTATATATGGCCGCACATTTAAAGATGAGAACTTCAAGTTGGCTCATGTTGGACCTGGAGTTGTTAGTATGGCAAATGCTGGCCCTAACACCAATGGCAGCCAATTTTTCATATGCACTGTCAAGACCCCATGGCTGGACCAGAGGCATGTAGTTTTCGGGCAAGTTTTGGAAGGCATGGATATTGTTAAGCTGGTAGAGTCCCAAGAGACTGACAGAGGAGACCGCCCTAGAAAGAAGGTGGTTATCAGCGAATGTGGTGAACTGCCAATGGTCTGA 789 48.16 MAASLTTLSNVGSLSSPRSVAQIKALGPTCNALKLPRSPFPSNVSSSSSSSFVSGSFRLVPLTSSLNPCSRRRTGLLSSLRASAQEAPLQSKVTQKVYFDISIGNPVGKVVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLVESQETDRGDRPRKKVVISECGELPMV* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21897412 21913235 - Vvi1g1302 Vvi1g1302 770502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1302 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 111 257 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 Gene3D - 82 261 IPR029000 -
Vvi1g1302 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 233 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 108 258 IPR002130 GO:0000413|GO:0003755
Vvi1g1302 262 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 37 259 - -
Vvi1g1302 262 SUPERFAMILY Cyclophilin-like 89 259 IPR029000 -
Vvi1g1302 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 37 259 - -
Vvi1g1302 262 CDD cyclophilin_ABH_like 96 257 - -
Vvi1g1302 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1302 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - vvi:100248997 479.944
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33