Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1307 ATGGAGAAGCCCCCTCCTGAGAAATCCGGTAGTTTCTCCGGACACAATGTCGAGTCCCATCCACCGGAGTCAGAGGCTGAAGGAGAACTTGAGGATAGGGAAAATGCGAAGGAGTCTTCCTCCATTTCCGATTCAGCCCTACCTCAAGTTTCTCAGGACATTGATGGGTTTCTCTCCCATCTGTCTCTTCATGACGACAAATCTAACCCTCCGGACGTGCCGGATTCGGTTGAGGTGTTTTGTAAGCTGGTGGAGGCAATGATCGGAAACTACGATTCCGGTGATAGTTCTGCGAGGTTTGGTCAAGTTCCAGAGGAAGATACAGCGTTTGTAGAGTCGGTGGGGCGAATTTCTAAGCTGATGAATGCTCTGCGTGGTTTCCCGGTGGAGTCGCCCGCTGCAGCAATGTACGGACGTTCCGGGAGTGTTCTGCAACGAGCAATGTCGTTCCTGGAGGATGAGCTCCGGACACTTCTAGAAGATTCTAGAAGCCATATTTCCGATTCTAAGAGTTTGAAGACGAAGCATCCGTCGTTCAACTCCAAAGAAGATCACGATCGGTGTCCGCTGCCTGAATCTGAGTCCACCGGCGATGATGAGTATCCGGCGTACCCGCCGGAGGTCGTCGCCAGCATGAAGAAAATTGCGATGGCCATGATCTCCGCAGGGTACGAGACAGAGTGTTGCCAGGTTTTCAGCATTCTCAGGCGTAACGCGTTCAAGGAGGCAATCAACAAGCTGGGGTTTGACAGTATCAGCATCGACGATGTGCAGAAGATGCACTGGGAAACTCTGGAAGGAGAGATTGCGAAATGGATCAAAGTCGTGAAGCACTGCTCCCTCATCCTCTTCCCCGGCGAACGGCGATTCGCTGAATCGGTCTTCGAGGACTATCCAGAGATATTCAGCAGCCAATTCAGCAACCTAGCACGTGCTACCGTGATACATTTCCTCAATTTCGCAGAAGCGGTGGCAATGACGAAGCGATCGGCAGAGAAGCTGTTCAAATTCCTGGACATGTACGACCGCAGTGAGCATTTTCTGCGATCTGGAGAACTCAATCAAAAGCGACGTCAGCAAAACTCCTGTCCCAAGCGGTGCAGTTCACCCCCTGACTCGCTACACCATGAACTACCTGAAATACGCCTGCGAGTACAAAGACACCTTGGAAGAAGTCTTCCAACAGCACCAGAAAATCGAGCGCACCGACGAAGCAGGTTCCGACTGATGGACCTCCTGGACTCGAATCTCGACACCAAATCCAAGCTCTACAAAGACATGTCACTGCGCTACATTTTCCTGATGAACAATGGCAGGTACATTCTCCAAAAGATCAAAGGCTCATCAGAGATCCACGAGGTGATGGGAGACACCTGGTGCCGGAGGCGATCTTCGGATCTGAGGCAGTACCACAAGAACTACCAGAGAGAGACGTGGAGCAAAGTGTTGCAGTGCTTGAGAGACGAAGGCCTACAAGTGAACGGAAAAGTGAACAAGCCAGTGCTGAAGGAGAGGTTCAAGACCTTCAACACCTTGTTTGATGAGATCCACAAGACTCAAAGCACTTGGGTGGTGAGCGACGAGCAGCTTCAGTCGGAGCTTCGAGTGTCCATCTCTGCAGTGATGATTCCAGCTTACCGATCATTCCTAGCGCGGTTCAGCCAGTACTTGGACTCCGGGCGGCAGACAGAGAAATACGTAAAGTATCAACCAGACGATATCGAGACCTCCATTGATGAATTGTTTGATGGAAACCCTACATCGATGACAAGGAAGAGAACATGA 1785 51.04 MEKPPPEKSGSFSGHNVESHPPESEAEGELEDRENAKESSSISDSALPQVSQDIDGFLSHLSLHDDKSNPPDVPDSVEVFCKLVEAMIGNYDSGDSSARFGQVPEEDTAFVESVGRISKLMNALRGFPVESPAAAMYGRSGSVLQRAMSFLEDELRTLLEDSRSHISDSKSLKTKHPSFNSKEDHDRCPLPESESTGDDEYPAYPPEVVASMKKIAMAMISAGYETECCQVFSILRRNAFKEAINKLGFDSISIDDVQKMHWETLEGEIAKWIKVVKHCSLILFPGERRFAESVFEDYPEIFSSQFSNLARATVIHFLNFAEAVAMTKRSAEKLFKFLDMYDRSEHFLRSGELNQKRRQQNSCPKRCSSPPDSLHHELPEIRLRVQRHLGRSLPTAPENRAHRRSRFRLMDLLDSNLDTKSKLYKDMSLRYIFLMNNGRYILQKIKGSSEIHEVMGDTWCRRRSSDLRQYHKNYQRETWSKVLQCLRDEGLQVNGKVNKPVLKERFKTFNTLFDEIHKTQSTWVVSDEQLQSELRVSISAVMIPAYRSFLARFSQYLDSGRQTEKYVKYQPDDIETSIDELFDGNPTSMTRKRT* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21941246 21943211 - Vvi1g1307 Vvi1g1307 770507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1307 594 MobiDBLite consensus disorder prediction 166 194 - -
Vvi1g1307 594 MobiDBLite consensus disorder prediction 354 368 - -
Vvi1g1307 594 SUPERFAMILY Cullin repeat-like 104 583 IPR016159 -
Vvi1g1307 594 MobiDBLite consensus disorder prediction 354 373 - -
Vvi1g1307 594 MobiDBLite consensus disorder prediction 166 203 - -
Vvi1g1307 594 Pfam Exo70 exocyst complex subunit 271 353 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi1g1307 594 Pfam Exo70 exocyst complex subunit 409 580 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi1g1307 594 MobiDBLite consensus disorder prediction 1 49 - -
Vvi1g1307 594 PANTHER EXOCYST COMPLEX PROTEIN EXO70 42 343 IPR004140 GO:0000145|GO:0006887
Vvi1g1307 594 PANTHER EXOCYST COMPLEX PROTEIN EXO70 403 592 IPR004140 GO:0000145|GO:0006887
Vvi1g1307 594 MobiDBLite consensus disorder prediction 20 39 - -
Vvi1g1307 594 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 42 343 - -
Vvi1g1307 594 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 403 592 - -
Vvi1g1307 594 Gene3D Exocyst complex component Exo70 388 592 - -
Vvi1g1307 594 Gene3D Exocyst complex component Exo70 97 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1307 K07195 EXOC7, EXO70; exocyst complex component 7 - vvi:100259218 683.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1307 . . . . . . . Bma15g00313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00293 . . Blo06g00756 Blo12g00287 . . . . . . . . . . . . . . Cpe03g01216 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005149 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 41