Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g131 ATGAAGGAAAATGGTTCAATGACTAGCAAAATGATCAACAGAAACTGGGTCCTGAAGCGCAAACGTAGAAAACTTCCGTGTGGACCTGATCTATCTAATGGTAAGGAAGGCACTTCTATAGCCTCAGAATCTACAGGAAATACTTCTTCAGCTAAGCGTCGGCTGAAAGGTGAAGCAAGTTCTGATCGATCCGCATTGAAGAAGAAAGGAAATGATGGGTACTACTTTGAATGCGTGATCTGTGATCTTGGTGGAAATTTGCTGTGTTGTGACAGCTGTCCTCGAACCTATCATCTCCAGTGTCTCAATCCACCTCTTAAGCGCATTCCGAATGGAAAGTGGCAATGCCCCAAATGCTTCTGTTCCATTGAAAAGAAACTTGATTCATCCCAAATAGATGTATCCTCAAGCCCCAAGCCAAGTCATCCATCTGTTGCTTCTGGAAGGAAGCCTGATTTATCATGTGATAATGGAACTTCTGGAAACAAACTTATTCACGCAATGGATGCTGCCACCCGCAAAGCCAGAAAAAGAAAGCATAAAGTTAATAGTGATGACAGTCAAAAGAAGTCTAGGACTGATAAAGGAAAACATGCTGCTAATACTTCTAAAAAAAGTGGATCCAAAGCAAATTCTATGAGCCCTGAGACTAGTAGATCACATCGAAAGCGTAGAACTGCGGATAAGGGTGTTTCTGCAGGTCTATCAAAGGAGGATGTTGGAATCAAGAGCTCAGATGTCCAGAAAAAAAATGAGAAGCTTCCTGTGGAAGGAACAAACCCATCACATGATGTTGTTGAAGCAGGGGGTAACATGGATGAAACAGTGACATGTGAAGAAAATGTTACTGGTGAACTTCAACAGGTTGATCGGGTTCTGGGATGTCGAGTCCAAGGTGATAATACAAACTCTTCATGTCACATCTCTGTGACGGTCCCGACTGACCTGCCATCTGATAATGTACTAATTCCAGAAAATCAAAACAGGTCACCCGAGGAAATTCTTAGTGGTGATGTAGATTTAGATGGAGAAACTGCTGAAAAACTTCATGAGGGTTCCATTGATGGTAAAGATCAAGATCAATCTGCTGTAACTACCGAAAATTTGAGGAAACAACCAACCGAAAAGATGGTGATAGAAGATAGCACCAATGCAAAGTATGGAATGGCAGTGATAAATATCTCTTTTGTCAAATGGAATGGTCTCCCTTACGATGAATGCACTTGGGAAAGACTAGATGAACCAGATGACTTGCCCAGGGGGAAGGGTGATGGTCATCAGAGTGACATAGTTACTCTTGCAGAGCAACCCAAGGAGCTAAAAGGTGGTTCATTATTTCCCCATCAGCTGGAAGCTCTGAATTGGCTACGTAAATGCTGGCACAAATCCAAGAATGTGATACTTGCTGATGAAATGGGGCTTGGAAAAACATTTTCATTATGGGCTCCTAATTTAAATAAAACGGCTTCCTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTTGCGGATTCCTCTCATCTGCGTGGTGTTCCTTGGGAAGTTCTTGTGGTTGATGAGGGGCACCGTCTAAAGAACTCAGGAAGTAAACTTTTCAGCCTGCTCAATTCATTTTCTTTCCAACATCGAGTACTGTTGACTGGTACACCTCTTCAGAACAACATTGGTGAGATGTATAATTTGGTGGATGGCTCTGTTTCTGTGGCTGATCGTCAAGCTGCCATTGCACGTTTTAACCAAGATAAAACTCGGTTTGTCTTCCTTTTGTCAACACGCTCTTGTGGACTTGGGATCAATTTGGCAACTGCTGACACTGTCATTATTTATGACTCTGATTTCAACCCACATGCTGACATCCAAGCAATGAACCGGGCACATCGAATTGGACAATCAAATAGACTTTTGGTGTACAGGCTTGTTGTTCGTGCTAGTGTTGAAGAGCGTATTTTGCAGCTTGCAAAGAAGAAACTGATGCTTGATCAACTTTTTGTGAACAAATCTGGATCTCAGAAGGAAGTTGAGGACATCCTAAGGTGGGGAACAGAAGAACTTTTTAATGATTCTTCCAGTGTAACTGGGAAAGATGCAGATGGAAGCACCAAGATTGTATGGGATGAAAATGCAATTATGAAATTGCTTGACCGTACAAACCTGCAGTCTTCATCGCCTGCTGAGGCTGATCTGGAGAATGACATGCTAGGCTCTGTAAAGTCACTGGAATGGAATGATGAGCCAACAGATGAACAGGGTGGAACAGAATTACCTCCTGTTGTCACTGATGATGTTTCAGCACAAAATTCTGAAAGAAAAGAGGATAATTTGGTTGGTACTGAAGAAAATGAATGGGACAAACTTCTGCGTATAAGATGGGAGAAATATCAAAGTGAGGAGGAAGCTGCTCTTGGTCGAGGGAAGCGACAGAGAAAAGCTGTTTCTTATAGAGAGGCATATGCTCCACACCCAAGTGAAACATTGAGTGAGAGTGGTGGTGAAGAGGACCGAGAACCTGAACCAGAGCCAGAGCGAGAATATACTCCAGCAGGGCGAGCTCTAAAAGCAAAATTTGCTAAGCTCCGTGCTAGACAAAAGGAACGGCTGGCTCAGAGGAATGCAATAGAGAGATCTTGCAATCAAGTGACAAGATTAGCTCAACCTGTGAGAGAAAAGGCTCCAGCAATTGACTTGGAGGATGGTAAAATTGGTCAGCCATTGGATGCAATGAAGGGCAAGGCTGACTCTAATGTAAGGCTGGGCAGACAATCAAGGCACAAGAGTCATTTGGATCTTTCGGCCAGAGCTCTTGGCCATCCCTCTCCTGACATCTTCCTACCAAGTCACCATTATCAGGGTACAAGCTATACAAACTTGGTGGCCAATAACTTGTTACCAGTTCTGGGACTATGTGCTCCCAATGCTACTCAACTAGAATCATCGCACAAGAACTTTTCAAGATCCAATGGCAGACAAACCAGACATGGGGTTGGACCAGAGTTCCCCTTCTGTTTAGCTCCTTGCTCCGGAACTTCTATGGAGATGGATATAAAAGGCCATGAGAATGCCTCAGACAAGCTAAGACTGCTAGATGCATCAACTGATCTACCACAGCTGCAGCGAAAGAATAACAATCCAGATAATTGTTCTCCCTTTGGTCCGTCCCCTCCAGCTGCTCCACAAGAAAAAGGTTCTGATTATGTAGAAAGATCAGGTGCTGGTTTCTCTGATTTCCCAGAAAAGATGGCAATGGCCAACTTGCCTTTTGATGAAAAGTTACTGCCTCGATTCCCACTCCCAGCTAGAAGTATGCCCAATCCATATCCTGACTTCTTACCTAGCTTATCCTTGGGGACCAGAGTTGAAGCTGCAAATGACTCTGTGCAAGACCTTTCTACAATGCCATTGTTACCAAAATTTAAATTTCCTCCACAAGATGCACCTAGATATAATCAGCAAGAAAGGGAGGGACCTCCCACATTGGGCTTGGGCCAGACGCCAGCCACATTGTCATCCTTTCCTGAAAACCATAGGAAGGTCCTTGAAAACATAATGATGAGGACTGGGTCTGGATCAATGAACTTGTTTAAAAAGAAATCAAGAGTAGAAGGCTGGTCTGAAGATGAGCTTGATTTCCTCTGGATTGGTGTTCGTAGGCATGGCCGGGGTAATTGGGATGCTATGCTTAGAGACCCAAGGTTAAAATTTTCAAAGTATAAAACTGCAGATGATTTGTCAGCAAGGTGGGAGGAGGAACAACTCAAGATTTTAGAGGGACCAGCTTTGCCAATGCCAAAATCGAGCAAATCTACAAAAGGTAATAAATCTTCATTGTTTCCAAGCATCTCTGATGGAATGATGATGCGAGCGTTACATGGAAGTAGACTTGGTGCACCCATGAAATTTCAAAGCCACCTAACAGACATGAAATTGGGTTTTGGCGATCTTGCATCCAGTTTACCACATTTTGATCCATCTCATCGACTTGGTTTGCAAAATGACCATTTTTCACCTGTTCCACATTGGAATTCTGACAAATTCCCAACAAATTTTGTTAGAGATTCTTCATCTGGACCCTCTGATAGACCAGGAACTTCTTCGAACATACACATGGAGCAGCCATTTCTGCTCAATTCTTTTGGTACCAGCAGCTTGGGATCTCTAGGTTTGACTTCCTCAAGTAGCTTTGATCTGTTGCAGAAGGAGGATGAACTAGGTGCAACTAAGTATGGAAAATTGCCTAGTCTTCTGGATAGATCATTGAATCTTTTGCGCGATTCTCATAATAATATGGGTGCTGGCGAATCAACAAGCTCTGGATTGATGCCTGATCCTAATAAAGGGTTGAGTCTTTCCAATTCAAAAGGGAAAGAAGTAGAAGGAAGTAGTCCATCAAAGAATAAGCTACCCCATTGGCTCCGGGAAGCTGTAAGTGCTCCTTCAAAACCTCCAGATCCTGAGCTGCCTCCCACAGTCTCTGCAATTGCTCAATCAGTTCGCTTGTTATATGGTGAAGAGAAGCCAACAATTCCTCCATTTGTGGCCCCAGGCCCACCTCCCTCCCTGCCAAAGGATCCCCGACTTAACCTGAAAAAGAAGAAGCGCAGGTCACATGTGCTCAGGCGGCTCTCAGGAGATAAGAAAAGCACTGGTTTGTCCCCTTCTCCTGAAGTGCTTCAGTTGGTAGCATCCTGTGTTGCCCCAGGCCCCCATATACCTCCAGTTCCTGGCATGCCAAGCTCAGGCTTCCTCGACAGCAAGCTCCCTTTGCCAAAATTCATCGACAGAGGTGAATTTCCAGACTCAACAGGGGCATCTGGAAATCAGAAGGCAGCAAAACCCAGTCGGACCCTTCTCATGCTGAACATCCAAATGTGGAGGAAATATCATCAGAGGGGACTGTCTCTGATCATCGGGTGA 4917 43.85 MKENGSMTSKMINRNWVLKRKRRKLPCGPDLSNGKEGTSIASESTGNTSSAKRRLKGEASSDRSALKKKGNDGYYFECVICDLGGNLLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKCFCSIEKKLDSSQIDVSSSPKPSHPSVASGRKPDLSCDNGTSGNKLIHAMDAATRKARKRKHKVNSDDSQKKSRTDKGKHAANTSKKSGSKANSMSPETSRSHRKRRTADKGVSAGLSKEDVGIKSSDVQKKNEKLPVEGTNPSHDVVEAGGNMDETVTCEENVTGELQQVDRVLGCRVQGDNTNSSCHISVTVPTDLPSDNVLIPENQNRSPEEILSGDVDLDGETAEKLHEGSIDGKDQDQSAVTTENLRKQPTEKMVIEDSTNAKYGMAVINISFVKWNGLPYDECTWERLDEPDDLPRGKGDGHQSDIVTLAEQPKELKGGSLFPHQLEALNWLRKCWHKSKNVILADEMGLGKTFSLWAPNLNKTASYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLVDGSVSVADRQAAIARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSSSVTGKDADGSTKIVWDENAIMKLLDRTNLQSSSPAEADLENDMLGSVKSLEWNDEPTDEQGGTELPPVVTDDVSAQNSERKEDNLVGTEENEWDKLLRIRWEKYQSEEEAALGRGKRQRKAVSYREAYAPHPSETLSESGGEEDREPEPEPEREYTPAGRALKAKFAKLRARQKERLAQRNAIERSCNQVTRLAQPVREKAPAIDLEDGKIGQPLDAMKGKADSNVRLGRQSRHKSHLDLSARALGHPSPDIFLPSHHYQGTSYTNLVANNLLPVLGLCAPNATQLESSHKNFSRSNGRQTRHGVGPEFPFCLAPCSGTSMEMDIKGHENASDKLRLLDASTDLPQLQRKNNNPDNCSPFGPSPPAAPQEKGSDYVERSGAGFSDFPEKMAMANLPFDEKLLPRFPLPARSMPNPYPDFLPSLSLGTRVEAANDSVQDLSTMPLLPKFKFPPQDAPRYNQQEREGPPTLGLGQTPATLSSFPENHRKVLENIMMRTGSGSMNLFKKKSRVEGWSEDELDFLWIGVRRHGRGNWDAMLRDPRLKFSKYKTADDLSARWEEEQLKILEGPALPMPKSSKSTKGNKSSLFPSISDGMMMRALHGSRLGAPMKFQSHLTDMKLGFGDLASSLPHFDPSHRLGLQNDHFSPVPHWNSDKFPTNFVRDSSSGPSDRPGTSSNIHMEQPFLLNSFGTSSLGSLGLTSSSSFDLLQKEDELGATKYGKLPSLLDRSLNLLRDSHNNMGAGESTSSGLMPDPNKGLSLSNSKGKEVEGSSPSKNKLPHWLREAVSAPSKPPDPELPPTVSAIAQSVRLLYGEEKPTIPPFVAPGPPPSLPKDPRLNLKKKKRRSHVLRRLSGDKKSTGLSPSPEVLQLVASCVAPGPHIPPVPGMPSSGFLDSKLPLPKFIDRGEFPDSTGASGNQKAAKPSRTLLMLNIQMWRKYHQRGLSLIIG* 1639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1272688 1293994 - Vvi1g131 Vvi1g131 769331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1532 1553 - -
Vvi1g131 1638 Gene3D - 386 421 - -
Vvi1g131 1638 SMART DUF1087_2 763 823 IPR009463 -
Vvi1g131 1638 ProSitePatterns Zinc finger PHD-type signature. 78 119 IPR019786 -
Vvi1g131 1638 Gene3D - 1177 1260 - -
Vvi1g131 1638 CDD SF2_C_SNF 517 642 - -
Vvi1g131 1638 SUPERFAMILY FYVE/PHD zinc finger 72 127 IPR011011 -
Vvi1g131 1638 SUPERFAMILY Homeodomain-like 1203 1250 IPR009057 -
Vvi1g131 1638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 120 IPR013083 -
Vvi1g131 1638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 679 IPR001650 -
Vvi1g131 1638 Gene3D - 422 481 IPR038718 -
Vvi1g131 1638 Gene3D - 487 562 IPR038718 -
Vvi1g131 1638 SMART ultradead3 441 577 IPR014001 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 131 266 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 564 1540 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 15 129 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 396 480 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 486 564 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 145 372 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 743 779 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1426 1459 - -
Vvi1g131 1638 CDD PHD2_CHD_II 78 119 - -
Vvi1g131 1638 ProSiteProfiles Zinc finger PHD-type profile. 75 122 IPR019787 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1426 1469 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 242 257 - -
Vvi1g131 1638 CDD DEXHc_Snf 445 565 - -
Vvi1g131 1638 Gene3D - 563 662 IPR027417 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1 66 - -
Vvi1g131 1638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 476 570 IPR014001 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1347 1368 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 799 849 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 349 370 - -
Vvi1g131 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 670 IPR027417 -
Vvi1g131 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 554 IPR027417 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 799 815 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1508 1527 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1141 1169 - -
Vvi1g131 1638 SMART helicmild6 531 631 IPR001650 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 181 201 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1346 1368 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 145 372 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 396 480 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 486 564 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 564 1540 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 15 129 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1035 1073 - -
Vvi1g131 1638 CDD SANT_TRF 1204 1248 - -
Vvi1g131 1638 Pfam CHD subfamily II, DUF1087 777 817 IPR009463 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 35 54 - -
Vvi1g131 1638 Pfam PHD-finger 78 121 IPR019787 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 216 232 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1510 1524 - -
Vvi1g131 1638 Pfam SNF2-related domain 489 565 IPR000330 GO:0005524|GO:0140658
Vvi1g131 1638 SMART PHD_3 77 120 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g131 - - - vvi:100247555 1871.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005465 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 0 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14481 PF00176 SNF2_N 7.80E-18 CL0023 Vvi TR