Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g131 ATGAAGGAAAATGGTTCAATGACTAGCAAAATGATCAACAGAAACTGGGTCCTGAAGCGCAAACGTAGAAAACTTCCGTGTGGACCTGATCTATCTAATGGTAAGGAAGGCACTTCTATAGCCTCAGAATCTACAGGAAATACTTCTTCAGCTAAGCGTCGGCTGAAAGGTGAAGCAAGTTCTGATCGATCCGCATTGAAGAAGAAAGGAAATGATGGGTACTACTTTGAATGCGTGATCTGTGATCTTGGTGGAAATTTGCTGTGTTGTGACAGCTGTCCTCGAACCTATCATCTCCAGTGTCTCAATCCACCTCTTAAGCGCATTCCGAATGGAAAGTGGCAATGCCCCAAATGCTTCTGTTCCATTGAAAAGAAACTTGATTCATCCCAAATAGATGTATCCTCAAGCCCCAAGCCAAGTCATCCATCTGTTGCTTCTGGAAGGAAGCCTGATTTATCATGTGATAATGGAACTTCTGGAAACAAACTTATTCACGCAATGGATGCTGCCACCCGCAAAGCCAGAAAAAGAAAGCATAAAGTTAATAGTGATGACAGTCAAAAGAAGTCTAGGACTGATAAAGGAAAACATGCTGCTAATACTTCTAAAAAAAGTGGATCCAAAGCAAATTCTATGAGCCCTGAGACTAGTAGATCACATCGAAAGCGTAGAACTGCGGATAAGGGTGTTTCTGCAGGTCTATCAAAGGAGGATGTTGGAATCAAGAGCTCAGATGTCCAGAAAAAAAATGAGAAGCTTCCTGTGGAAGGAACAAACCCATCACATGATGTTGTTGAAGCAGGGGGTAACATGGATGAAACAGTGACATGTGAAGAAAATGTTACTGGTGAACTTCAACAGGTTGATCGGGTTCTGGGATGTCGAGTCCAAGGTGATAATACAAACTCTTCATGTCACATCTCTGTGACGGTCCCGACTGACCTGCCATCTGATAATGTACTAATTCCAGAAAATCAAAACAGGTCACCCGAGGAAATTCTTAGTGGTGATGTAGATTTAGATGGAGAAACTGCTGAAAAACTTCATGAGGGTTCCATTGATGGTAAAGATCAAGATCAATCTGCTGTAACTACCGAAAATTTGAGGAAACAACCAACCGAAAAGATGGTGATAGAAGATAGCACCAATGCAAAGTATGGAATGGCAGTGATAAATATCTCTTTTGTCAAATGGAATGGTCTCCCTTACGATGAATGCACTTGGGAAAGACTAGATGAACCAGATGACTTGCCCAGGGGGAAGGGTGATGGTCATCAGAGTGACATAGTTACTCTTGCAGAGCAACCCAAGGAGCTAAAAGGTGGTTCATTATTTCCCCATCAGCTGGAAGCTCTGAATTGGCTACGTAAATGCTGGCACAAATCCAAGAATGTGATACTTGCTGATGAAATGGGGCTTGGAAAAACATTTTCATTATGGGCTCCTAATTTAAATAAAACGGCTTCCTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTTGCGGATTCCTCTCATCTGCGTGGTGTTCCTTGGGAAGTTCTTGTGGTTGATGAGGGGCACCGTCTAAAGAACTCAGGAAGTAAACTTTTCAGCCTGCTCAATTCATTTTCTTTCCAACATCGAGTACTGTTGACTGGTACACCTCTTCAGAACAACATTGGTGAGATGTATAATTTGGTGGATGGCTCTGTTTCTGTGGCTGATCGTCAAGCTGCCATTGCACGTTTTAACCAAGATAAAACTCGGTTTGTCTTCCTTTTGTCAACACGCTCTTGTGGACTTGGGATCAATTTGGCAACTGCTGACACTGTCATTATTTATGACTCTGATTTCAACCCACATGCTGACATCCAAGCAATGAACCGGGCACATCGAATTGGACAATCAAATAGACTTTTGGTGTACAGGCTTGTTGTTCGTGCTAGTGTTGAAGAGCGTATTTTGCAGCTTGCAAAGAAGAAACTGATGCTTGATCAACTTTTTGTGAACAAATCTGGATCTCAGAAGGAAGTTGAGGACATCCTAAGGTGGGGAACAGAAGAACTTTTTAATGATTCTTCCAGTGTAACTGGGAAAGATGCAGATGGAAGCACCAAGATTGTATGGGATGAAAATGCAATTATGAAATTGCTTGACCGTACAAACCTGCAGTCTTCATCGCCTGCTGAGGCTGATCTGGAGAATGACATGCTAGGCTCTGTAAAGTCACTGGAATGGAATGATGAGCCAACAGATGAACAGGGTGGAACAGAATTACCTCCTGTTGTCACTGATGATGTTTCAGCACAAAATTCTGAAAGAAAAGAGGATAATTTGGTTGGTACTGAAGAAAATGAATGGGACAAACTTCTGCGTATAAGATGGGAGAAATATCAAAGTGAGGAGGAAGCTGCTCTTGGTCGAGGGAAGCGACAGAGAAAAGCTGTTTCTTATAGAGAGGCATATGCTCCACACCCAAGTGAAACATTGAGTGAGAGTGGTGGTGAAGAGGACCGAGAACCTGAACCAGAGCCAGAGCGAGAATATACTCCAGCAGGGCGAGCTCTAAAAGCAAAATTTGCTAAGCTCCGTGCTAGACAAAAGGAACGGCTGGCTCAGAGGAATGCAATAGAGAGATCTTGCAATCAAGTGACAAGATTAGCTCAACCTGTGAGAGAAAAGGCTCCAGCAATTGACTTGGAGGATGGTAAAATTGGTCAGCCATTGGATGCAATGAAGGGCAAGGCTGACTCTAATGTAAGGCTGGGCAGACAATCAAGGCACAAGAGTCATTTGGATCTTTCGGCCAGAGCTCTTGGCCATCCCTCTCCTGACATCTTCCTACCAAGTCACCATTATCAGGGTACAAGCTATACAAACTTGGTGGCCAATAACTTGTTACCAGTTCTGGGACTATGTGCTCCCAATGCTACTCAACTAGAATCATCGCACAAGAACTTTTCAAGATCCAATGGCAGACAAACCAGACATGGGGTTGGACCAGAGTTCCCCTTCTGTTTAGCTCCTTGCTCCGGAACTTCTATGGAGATGGATATAAAAGGCCATGAGAATGCCTCAGACAAGCTAAGACTGCTAGATGCATCAACTGATCTACCACAGCTGCAGCGAAAGAATAACAATCCAGATAATTGTTCTCCCTTTGGTCCGTCCCCTCCAGCTGCTCCACAAGAAAAAGGTTCTGATTATGTAGAAAGATCAGGTGCTGGTTTCTCTGATTTCCCAGAAAAGATGGCAATGGCCAACTTGCCTTTTGATGAAAAGTTACTGCCTCGATTCCCACTCCCAGCTAGAAGTATGCCCAATCCATATCCTGACTTCTTACCTAGCTTATCCTTGGGGACCAGAGTTGAAGCTGCAAATGACTCTGTGCAAGACCTTTCTACAATGCCATTGTTACCAAAATTTAAATTTCCTCCACAAGATGCACCTAGATATAATCAGCAAGAAAGGGAGGGACCTCCCACATTGGGCTTGGGCCAGACGCCAGCCACATTGTCATCCTTTCCTGAAAACCATAGGAAGGTCCTTGAAAACATAATGATGAGGACTGGGTCTGGATCAATGAACTTGTTTAAAAAGAAATCAAGAGTAGAAGGCTGGTCTGAAGATGAGCTTGATTTCCTCTGGATTGGTGTTCGTAGGCATGGCCGGGGTAATTGGGATGCTATGCTTAGAGACCCAAGGTTAAAATTTTCAAAGTATAAAACTGCAGATGATTTGTCAGCAAGGTGGGAGGAGGAACAACTCAAGATTTTAGAGGGACCAGCTTTGCCAATGCCAAAATCGAGCAAATCTACAAAAGGTAATAAATCTTCATTGTTTCCAAGCATCTCTGATGGAATGATGATGCGAGCGTTACATGGAAGTAGACTTGGTGCACCCATGAAATTTCAAAGCCACCTAACAGACATGAAATTGGGTTTTGGCGATCTTGCATCCAGTTTACCACATTTTGATCCATCTCATCGACTTGGTTTGCAAAATGACCATTTTTCACCTGTTCCACATTGGAATTCTGACAAATTCCCAACAAATTTTGTTAGAGATTCTTCATCTGGACCCTCTGATAGACCAGGAACTTCTTCGAACATACACATGGAGCAGCCATTTCTGCTCAATTCTTTTGGTACCAGCAGCTTGGGATCTCTAGGTTTGACTTCCTCAAGTAGCTTTGATCTGTTGCAGAAGGAGGATGAACTAGGTGCAACTAAGTATGGAAAATTGCCTAGTCTTCTGGATAGATCATTGAATCTTTTGCGCGATTCTCATAATAATATGGGTGCTGGCGAATCAACAAGCTCTGGATTGATGCCTGATCCTAATAAAGGGTTGAGTCTTTCCAATTCAAAAGGGAAAGAAGTAGAAGGAAGTAGTCCATCAAAGAATAAGCTACCCCATTGGCTCCGGGAAGCTGTAAGTGCTCCTTCAAAACCTCCAGATCCTGAGCTGCCTCCCACAGTCTCTGCAATTGCTCAATCAGTTCGCTTGTTATATGGTGAAGAGAAGCCAACAATTCCTCCATTTGTGGCCCCAGGCCCACCTCCCTCCCTGCCAAAGGATCCCCGACTTAACCTGAAAAAGAAGAAGCGCAGGTCACATGTGCTCAGGCGGCTCTCAGGAGATAAGAAAAGCACTGGTTTGTCCCCTTCTCCTGAAGTGCTTCAGTTGGTAGCATCCTGTGTTGCCCCAGGCCCCCATATACCTCCAGTTCCTGGCATGCCAAGCTCAGGCTTCCTCGACAGCAAGCTCCCTTTGCCAAAATTCATCGACAGAGGTGAATTTCCAGACTCAACAGGGGCATCTGGAAATCAGAAGGCAGCAAAACCCAGTCGGACCCTTCTCATGCTGAACATCCAAATGTGGAGGAAATATCATCAGAGGGGACTGTCTCTGATCATCGGGTGA 4917 43.85 MKENGSMTSKMINRNWVLKRKRRKLPCGPDLSNGKEGTSIASESTGNTSSAKRRLKGEASSDRSALKKKGNDGYYFECVICDLGGNLLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKCFCSIEKKLDSSQIDVSSSPKPSHPSVASGRKPDLSCDNGTSGNKLIHAMDAATRKARKRKHKVNSDDSQKKSRTDKGKHAANTSKKSGSKANSMSPETSRSHRKRRTADKGVSAGLSKEDVGIKSSDVQKKNEKLPVEGTNPSHDVVEAGGNMDETVTCEENVTGELQQVDRVLGCRVQGDNTNSSCHISVTVPTDLPSDNVLIPENQNRSPEEILSGDVDLDGETAEKLHEGSIDGKDQDQSAVTTENLRKQPTEKMVIEDSTNAKYGMAVINISFVKWNGLPYDECTWERLDEPDDLPRGKGDGHQSDIVTLAEQPKELKGGSLFPHQLEALNWLRKCWHKSKNVILADEMGLGKTFSLWAPNLNKTASYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLVDGSVSVADRQAAIARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSSSVTGKDADGSTKIVWDENAIMKLLDRTNLQSSSPAEADLENDMLGSVKSLEWNDEPTDEQGGTELPPVVTDDVSAQNSERKEDNLVGTEENEWDKLLRIRWEKYQSEEEAALGRGKRQRKAVSYREAYAPHPSETLSESGGEEDREPEPEPEREYTPAGRALKAKFAKLRARQKERLAQRNAIERSCNQVTRLAQPVREKAPAIDLEDGKIGQPLDAMKGKADSNVRLGRQSRHKSHLDLSARALGHPSPDIFLPSHHYQGTSYTNLVANNLLPVLGLCAPNATQLESSHKNFSRSNGRQTRHGVGPEFPFCLAPCSGTSMEMDIKGHENASDKLRLLDASTDLPQLQRKNNNPDNCSPFGPSPPAAPQEKGSDYVERSGAGFSDFPEKMAMANLPFDEKLLPRFPLPARSMPNPYPDFLPSLSLGTRVEAANDSVQDLSTMPLLPKFKFPPQDAPRYNQQEREGPPTLGLGQTPATLSSFPENHRKVLENIMMRTGSGSMNLFKKKSRVEGWSEDELDFLWIGVRRHGRGNWDAMLRDPRLKFSKYKTADDLSARWEEEQLKILEGPALPMPKSSKSTKGNKSSLFPSISDGMMMRALHGSRLGAPMKFQSHLTDMKLGFGDLASSLPHFDPSHRLGLQNDHFSPVPHWNSDKFPTNFVRDSSSGPSDRPGTSSNIHMEQPFLLNSFGTSSLGSLGLTSSSSFDLLQKEDELGATKYGKLPSLLDRSLNLLRDSHNNMGAGESTSSGLMPDPNKGLSLSNSKGKEVEGSSPSKNKLPHWLREAVSAPSKPPDPELPPTVSAIAQSVRLLYGEEKPTIPPFVAPGPPPSLPKDPRLNLKKKKRRSHVLRRLSGDKKSTGLSPSPEVLQLVASCVAPGPHIPPVPGMPSSGFLDSKLPLPKFIDRGEFPDSTGASGNQKAAKPSRTLLMLNIQMWRKYHQRGLSLIIG* 1639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1272688 1293994 - Vvi1g131 Vvi1g131 769331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1532 1553 - -
Vvi1g131 1638 Gene3D - 386 421 - -
Vvi1g131 1638 SMART DUF1087_2 763 823 IPR009463 -
Vvi1g131 1638 ProSitePatterns Zinc finger PHD-type signature. 78 119 IPR019786 -
Vvi1g131 1638 Gene3D - 1177 1260 - -
Vvi1g131 1638 CDD SF2_C_SNF 517 642 - -
Vvi1g131 1638 SUPERFAMILY FYVE/PHD zinc finger 72 127 IPR011011 -
Vvi1g131 1638 SUPERFAMILY Homeodomain-like 1203 1250 IPR009057 -
Vvi1g131 1638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 120 IPR013083 -
Vvi1g131 1638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 679 IPR001650 -
Vvi1g131 1638 Gene3D - 422 481 IPR038718 -
Vvi1g131 1638 Gene3D - 487 562 IPR038718 -
Vvi1g131 1638 SMART ultradead3 441 577 IPR014001 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 131 266 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 564 1540 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 15 129 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 396 480 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 486 564 - -
Vvi1g131 1638 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 145 372 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 743 779 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1426 1459 - -
Vvi1g131 1638 CDD PHD2_CHD_II 78 119 - -
Vvi1g131 1638 ProSiteProfiles Zinc finger PHD-type profile. 75 122 IPR019787 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1426 1469 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 242 257 - -
Vvi1g131 1638 CDD DEXHc_Snf 445 565 - -
Vvi1g131 1638 Gene3D - 563 662 IPR027417 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1 66 - -
Vvi1g131 1638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 476 570 IPR014001 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1347 1368 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 799 849 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 349 370 - -
Vvi1g131 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 670 IPR027417 -
Vvi1g131 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 554 IPR027417 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 799 815 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1508 1527 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1141 1169 - -
Vvi1g131 1638 SMART helicmild6 531 631 IPR001650 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 181 201 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1346 1368 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 145 372 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 396 480 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 486 564 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 564 1540 - -
Vvi1g131 1638 PANTHER PROTEIN CHROMATIN REMODELING 4 15 129 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1035 1073 - -
Vvi1g131 1638 CDD SANT_TRF 1204 1248 - -
Vvi1g131 1638 Pfam CHD subfamily II, DUF1087 777 817 IPR009463 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 35 54 - -
Vvi1g131 1638 Pfam PHD-finger 78 121 IPR019787 -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 216 232 - -
Vvi1g131 1638 MobiDBLite consensus disorder prediction 1510 1524 - -
Vvi1g131 1638 Pfam SNF2-related domain 489 565 IPR000330 GO:0005524|GO:0140658
Vvi1g131 1638 SMART PHD_3 77 120 IPR001965 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14481 PF00176 SNF2_N 7.80E-18 CL0023 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g131 - - vvi:100247555 1871.29