Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1314 ATGGCAAAGCATGGGTTGGTTAGAGACCTCTATCTGCCTAATTCATCTCCATTTGCAAAGCTCTTGGACTCCTGCCTCCGTTCAAGGTCGGCCAGGGGCACTCGTCTGGTTCACGCCCGCATTCTCATGACTCAGTTTTCAATGGAAATCTTCATTCAGAACAGGTTGATTGATGTTTATGGGAAATGTGACTGTTTGGATGATGCCCGCAAGTTGTTTGATAGAATGCCCCAAAGGAACACTTTCACTTGGAATTCCCTTATAAGTGTGTTGACTAAATCGGGATTTCTTGATGAGGCAGCAAGGCTCTTTGGTTCAATGCCTGAGCCTGATCAGTGCTCGTGGAATTCGATGGTGTCGGGTTTCGCTCAACATGATCGATTCGAAGAATCTTTAGAATATTTTGTTAAGATGCATAGGGAGGACTTTTTGCTTAATGAGTACTCGTTTGGTAGTGCTCTGAGTGCCTGTGCAGGGTTGATGGATTTAAATATGGGTACCCAAGTCCATGCTTTGGTATCAAAATCTAGGTATTCAACCGATGTTTATATGGGGTCTGCCCTTATTGATATGTACTCTAAGTGTGGGAGTGTGGCTTGCGCTGAGGAAGTTTTTTCAGGAATGATCGAGCGGAACTTAGTCACATGGAATAGCTTGATTACCTGTTACGAGCAAAATGGTCCAGCAAGTGAAGCTCTAGAGGTATTTGTGAGGATGATGGACTCTGGACTAGAACCAGATGAGGTCACGCTAGCTAGCGTAGTCAGTGCCTGTGCAAGCTTGTGTGCACTCAAAGAAGGCCTGCAAATTCATGCCCGTGTCGTGAAAACTAACAAATTTAGGGATGATCTTGTTTTGGGCAATGCTTTGGTTGATATGTATGCAAAATGCAGTAAAGTTAATGAAGCCAGAAGGGTTTTTGATAGGATGTCTATTAGGAATGTCGTGTCTGAAACCTCCATGGTAAGCGGGTATGCAAGGGCAGCAAGCGTAAAAGCTGCAAGATTTATGTTTTCGAAGATGACACAAAGGAATGTAGTATCTTGGAATGCACTTATTGCAGGTTATACACAGAATGGGGAGAATGAAGAGGCTCTCAGACTCTTCCGCCTCCTAAAGAGGGAATCCATTTGGCCAACCCATTATACCTTTGGGAATCTCCTTAAGTCTGATATTTTTGTGGGAAACTCTCTCATAGACATGTACATGAAATGCGGTTCAATTGAAGATGGGAGCCGGGTGTTTGAGAAAATGAAGGAAAGAGATTGTGTTTCATGGAATGCCATAATAGTAGGGTATGCACAAAATGGTTATGGGGCAGAAGCTCTTCAAATTTTCAGAAAAATGTTGGTATGTGGAGAGAAACCCGACCATGTTACTATGATAGGAGTTCTATGTGCTTGTAGCCATGCAGGCTTGGTTGAAGAGGGCCGTCACTATTTCTTTTCAATGGAGGAGCATGGTTTAATACCACTGAAGGACCATTATACATGTATGGTCGATTTACTAGGACGAGCTGGTTGCCTCAATGAAGCAAAGAATTTAATTGAAGCAATGCCAGTGAATCCTGATGCTGTCGTGTGGGGGTCTTTGCTTGCTGCTTGTAAAGTTCATGGCAACATCGAAATGGGGAAGCATGCAGCAGAGAAGCTTTTGGAGATCGATCCTTGGAACTCTGGACCTTATGTTCTTCTCTCAAACATGTATGCTGAGCTTGGAAGATGGGGAGATGTTGTAAGAGTAAGGAAACTTATGAGGCAACAGGGGGTCACTAAGCAGCCAGGTTGCAGTTGGATTGAAGTAGAGAGCCGAGTGCATGTTTTCCTGGTTAAAGATAAAAGCCATCCTCATAGGAAGCAAATCTATTCAGTTCTCAAAATGCTCACAGAGCAAATGAAGCGGGTTGGATATATCCCAGATGCCAATGATTTCGAGGCTTATGATGAGCAGAGCAAATCTGAATAA 1965 43.56 MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDANDFEAYDEQSKSE* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22058281 22060336 + Vvi1g1314 Vvi1g1314 770514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vvi1g1314 654 SUPERFAMILY TPR-like 338 577 IPR011990 GO:0005515
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 421 IPR002885 -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 390 653 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 109 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 79 140 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 140 389 - -
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 6 166 IPR011990 GO:0005515
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat family 344 389 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat family 212 259 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat family 422 468 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat 495 520 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat 82 108 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat 288 313 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat 54 80 IPR002885 -
Vvi1g1314 654 Pfam PPR repeat 114 142 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 396 424 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 347 377 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 288 315 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 54 79 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 114 146 IPR002885 -
Vvi1g1314 654 TIGRFAM PPR: pentatricopeptide repeat domain 82 108 IPR002885 -
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 167 262 IPR011990 GO:0005515
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 314 389 IPR011990 GO:0005515
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 390 472 IPR011990 GO:0005515
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 473 644 IPR011990 GO:0005515
Vvi1g1314 654 Gene3D Tetratricopeptide repeat domain 263 313 IPR011990 GO:0005515
Vvi1g1314 654 SUPERFAMILY TPR-like 179 322 IPR011990 GO:0005515
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vvi1g1314 654 Pfam E motif 538 600 IPR046848 -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 390 653 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 79 140 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 109 - -
Vvi1g1314 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 140 389 - -
Vvi1g1314 654 Pfam E+ motif 605 632 IPR046849 -
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi1g1314 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1314 - - - vvi:100253980 1297.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008352 2 1 1 2 1 0 1 0 0 1 0 0 0 1 0 0 0 2 0 0 0 1 0 1 1 1 1 0 0 1 18