Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1315 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCGGACAAGGGTAGGGATGATCGGAGGGAATCTCCGCAGATGGTGGCATCCAACATCTCCAGATTGTCCTCCGGTGCAGACAGGCTCAAAGCAAGGAACAGCACCGGGTTGAAAAAGGAGTCATCTGGTCCTAAGGATGTGCCGGATGGCCATATCGCTGCTCAAACATTCACTTTCCGTGAGCTAGCGGTGGCAACAAAGAATTTCCAGCCAGAGTCCTTTATAGGGGAAGGGGGATTTGGACGTGTGTACAAAGGGCGACTTGAGAGTACGGGGCAGGTTGTTGCTGTTAAACAATTGGATAGAGAGGGTCTCCAGGGTAACAGGGAATTCCTGGTGGAGGTTCTCATGCTCAGCCTTCTGCATCACCCTAACCTAGTGAATCTGATAGGCTACTGTGCTGATGGAGAACAGCGACTTCTTGTCTATGAATTTATGCCCCTGGGATCACTGGAGGATCACCTTCTTGATCTTCCACCTGATAAGGAACCGCTGGATTGGAACACAAGAATGAAGATAGCAGCTGGTGCAGCCAAGGGTTTGGAATACTTGCATGACAAAGCAAGCCCTCCAGTTATTTATAGAGACTTCAAGTCATCCAATATTTTACTAGAAGAAGGATTTCACCCCAAGCTTTCTGATTTTGGGCTTGCAAAGCTTGGTCCTGTTGGGGACAAGTCACATGTTTCAACTAGGGTTATGGGCACTTATGGTTATTGTGCTCCCGAGTATGCCATGACTGGACAATTGACAGTGAAGTCTGATGTCTACAGCTTCGGGGTGGTCTTCTTGGAGCTGATTACTGGACGTAAAGCCATTGACAGCACCCTACCCCATGGAGAACAGAATCTTGTCACATGGGCCCGCCCTTTGTTCAATGATCGTCGAAAATTTGCAAAGTTGGCGGACCCACGATTGCATGGTCGGTATCCAATGCGGGGTCTCTATCAGGCTCTAGCTGTGGCATCCATGTGCATCCAAGAACAAGCTGCCACCCGTCCTCTCATTGGTGATGTGGTGACTGCCCTCTCTTATTTGGCAAACCAGTCATATGACCCTAATGCAGCTCATGGGCACATCTACAGAGGTTCTGGGGATAGAGATGAGAGGAGAAACAGAGAGGAGAGAAACTCTCCTAGGGAAACTGCAAGGATGCTAAACAGGGATTTGGATAGAGAACGAGCTGTTGCTGAAGCCAAAATGTGGGGAGAGAATTGGCGAGAAAAGAGACGACAAAGTGCTCAAGGCAGTTTTGATGGCACTAACGGGTAA 1320 48.94 MGCFPCFDSREEEKLNPDKGRDDRRESPQMVASNISRLSSGADRLKARNSTGLKKESSGPKDVPDGHIAAQTFTFRELAVATKNFQPESFIGEGGFGRVYKGRLESTGQVVAVKQLDREGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLLDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDFKSSNILLEEGFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTLPHGEQNLVTWARPLFNDRRKFAKLADPRLHGRYPMRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQSYDPNAAHGHIYRGSGDRDERRNREERNSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGTNG* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22067038 22072113 + Vvi1g1315 Vvi1g1315 770515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1315 439 MobiDBLite consensus disorder prediction 7 28 - -
Vvi1g1315 439 Pfam Protein kinase domain 87 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1315 439 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1315 439 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Vvi1g1315 439 PANTHER OS07G0668900 PROTEIN 1 434 - -
Vvi1g1315 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi1g1315 439 MobiDBLite consensus disorder prediction 29 56 - -
Vvi1g1315 439 MobiDBLite consensus disorder prediction 377 405 - -
Vvi1g1315 439 CDD STKc_IRAK 91 359 - -
Vvi1g1315 439 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Vvi1g1315 439 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 434 - -
Vvi1g1315 439 Gene3D Phosphorylase Kinase; domain 1 69 161 - -
Vvi1g1315 439 MobiDBLite consensus disorder prediction 1 66 - -
Vvi1g1315 439 MobiDBLite consensus disorder prediction 417 439 - -
Vvi1g1315 439 SUPERFAMILY Protein kinase-like (PK-like) 64 359 IPR011009 -
Vvi1g1315 439 MobiDBLite consensus disorder prediction 372 405 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1315 Vvi14g1132 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76491 PF00069 Pkinase 5.30E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1315 K13430 - vvi:100254113 837.795