Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g1315 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCGGACAAGGGTAGGGATGATCGGAGGGAATCTCCGCAGATGGTGGCATCCAACATCTCCAGATTGTCCTCCGGTGCAGACAGGCTCAAAGCAAGGAACAGCACCGGGTTGAAAAAGGAGTCATCTGGTCCTAAGGATGTGCCGGATGGCCATATCGCTGCTCAAACATTCACTTTCCGTGAGCTAGCGGTGGCAACAAAGAATTTCCAGCCAGAGTCCTTTATAGGGGAAGGGGGATTTGGACGTGTGTACAAAGGGCGACTTGAGAGTACGGGGCAGGTTGTTGCTGTTAAACAATTGGATAGAGAGGGTCTCCAGGGTAACAGGGAATTCCTGGTGGAGGTTCTCATGCTCAGCCTTCTGCATCACCCTAACCTAGTGAATCTGATAGGCTACTGTGCTGATGGAGAACAGCGACTTCTTGTCTATGAATTTATGCCCCTGGGATCACTGGAGGATCACCTTCTTGATCTTCCACCTGATAAGGAACCGCTGGATTGGAACACAAGAATGAAGATAGCAGCTGGTGCAGCCAAGGGTTTGGAATACTTGCATGACAAAGCAAGCCCTCCAGTTATTTATAGAGACTTCAAGTCATCCAATATTTTACTAGAAGAAGGATTTCACCCCAAGCTTTCTGATTTTGGGCTTGCAAAGCTTGGTCCTGTTGGGGACAAGTCACATGTTTCAACTAGGGTTATGGGCACTTATGGTTATTGTGCTCCCGAGTATGCCATGACTGGACAATTGACAGTGAAGTCTGATGTCTACAGCTTCGGGGTGGTCTTCTTGGAGCTGATTACTGGACGTAAAGCCATTGACAGCACCCTACCCCATGGAGAACAGAATCTTGTCACATGGGCCCGCCCTTTGTTCAATGATCGTCGAAAATTTGCAAAGTTGGCGGACCCACGATTGCATGGTCGGTATCCAATGCGGGGTCTCTATCAGGCTCTAGCTGTGGCATCCATGTGCATCCAAGAACAAGCTGCCACCCGTCCTCTCATTGGTGATGTGGTGACTGCCCTCTCTTATTTGGCAAACCAGTCATATGACCCTAATGCAGCTCATGGGCACATCTACAGAGGTTCTGGGGATAGAGATGAGAGGAGAAACAGAGAGGAGAGAAACTCTCCTAGGGAAACTGCAAGGATGCTAAACAGGGATTTGGATAGAGAACGAGCTGTTGCTGAAGCCAAAATGTGGGGAGAGAATTGGCGAGAAAAGAGACGACAAAGTGCTCAAGGCAGTTTTGATGGCACTAACGGGTAA | 1320 | 48.94 | MGCFPCFDSREEEKLNPDKGRDDRRESPQMVASNISRLSSGADRLKARNSTGLKKESSGPKDVPDGHIAAQTFTFRELAVATKNFQPESFIGEGGFGRVYKGRLESTGQVVAVKQLDREGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLLDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDFKSSNILLEEGFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTLPHGEQNLVTWARPLFNDRRKFAKLADPRLHGRYPMRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQSYDPNAAHGHIYRGSGDRDERRNREERNSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGTNG* | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 22067038 | 22072113 | + | Vvi1g1315 | Vvi1g1315 | 770515 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 7 | 28 | - | - | |
Vvi1g1315 | 439 | Pfam | Protein kinase domain | 87 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi1g1315 | 439 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi1g1315 | 439 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 376 | - | - | |
Vvi1g1315 | 439 | PANTHER | OS07G0668900 PROTEIN | 1 | 434 | - | - | |
Vvi1g1315 | 439 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - | |
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 377 | 405 | - | - | |
Vvi1g1315 | 439 | CDD | STKc_IRAK | 91 | 359 | - | - | |
Vvi1g1315 | 439 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524 | |
Vvi1g1315 | 439 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBS1 | 1 | 434 | - | - | |
Vvi1g1315 | 439 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 161 | - | - | |
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 417 | 439 | - | - | |
Vvi1g1315 | 439 | SUPERFAMILY | Protein kinase-like (PK-like) | 64 | 359 | IPR011009 | - | |
Vvi1g1315 | 439 | MobiDBLite | consensus disorder prediction | 372 | 405 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi1g1315 | Vvi14g1132 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76491 | PF00069 | Pkinase | 5.30E-44 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g1315 | K13430 | - | vvi:100254113 | 837.795 |