Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g132 ATGGAGAGAAATCTCGGAAGAGAAATGGAGCAACAGAAAAACTACGAACAAGTTCGATACAACATTGTGGAAGCCAGAAATGAGGGACTTGGGTCTGCAAATCAAAGGTTTCTTCATGATCCATCGAGCACCATTAATACCAATATGAGACCTCCTGATTTCAATATAACAGTTGCAGCTAGGCCTGTGCTGAATTACTCCATTCAGACTGGTGAAGAGTTTGCTCTCGAGTTTATGAATCCCCGGCAACACTTTGTTCCAAGTGCTTCTGGTGATCCTAACAGTGCAACTAACTATGCAGTTCTGAAGGGCTTTCTGGGAGCATCTCATACAGGGTCAGAAAGTGGGCCAGATATCCCAATGCTTACCTCTGTTGAAAAAAGTCGAGTCCAGGAGTTTGAGAGGAAGAGCTCTTCTGTGCACGAAGATAAAGGTTACTATGATTCTGTAAGATCAGTGCCTCGAATCTCATCTAGAAATGACAGTAGTCGGGGACTTCATGGCTATACCTCTTCAGGAGCATCTGAGAGATCATCGACAAAGTTCAAGTTCCTCTGCAGTTTTGGTGGTAAAATCCTCCCCCGTCCAAGTGATGGAAAGCTTAGGTATGTAGGAGGTGAAACACGTATTATTCGCATGAACAAGGACATATCTTGGCAGGATCTTATGCAGAAAACTATGACAATTTATAATCAATCTCATACGATCAAATATCAGCTTCCTGGTGAGGACCTTGATGCATTGGTTTCTGTATCTTGTGATGAGGATCTGCAAAACATGATGGAGGAGTGTAATGTACTAGAAGATGGGGGATCGCAGAAACTTAGGCTTTTTCTGTTTTCTAGTAGTGATTTTGATGATGGTCAGTTTGGCTTGGGAAGCATGGAGGGTGACTCTGAGATTCAATATGTGGTTGCTGTGAATGGAATGGACCTAGAATCAAGAAAGAACTCAATTGGGTTGGCAAGCACTTCAGATAACAATTTGGATGAGTTACTCAATCTAAATGTTGAAAGGGAGACTGGTCGAGTTGCAACAGAATTACCTGGACCTAGTACTGCACCTTCGACTGTCAATGTACATTCATCAGCAGTCCAATCTTCTCAACCACTGGTGCCGAATTTTTCTGGTGCTTATGAATCCAATTCAAAGCCTTACCAAGGTCAGAAAATGCGTCACGGAGAAGCTGAACAACATCAGGTAAAATCTGGTTCATATGCCTCTCCATGGAAAATGAATGAACCTGAAAAGAATAGGTCACTAGAAAAGGAAGCGTCTGTGAAGGAGGCAAAAATAAAAACTGATAGCTCAGTCCAAAAAATGAACGAGCTGGAAAAGATCCGGTCTTTAGAAAGTGAGCACAATGTTTCTTCACATCCACATGATGGTTCCGTTCCAAATTATATTCCTAGGGACGAAGCATCAGTTGTCAATTCTACTGCAGACATAGGAGTGCCCATGTTGCTTCCAAAAACAAGTAAAAAACACCTAGAATCTGTACAGATCTCAAAGCCCCCTGAAGCTGTAAGTGATGGGAAAATAAATACATTCAATGGAGATGGCCATTTTCATACCTCTGGTGGAGCATTTTCTCCCGGATATGGTGACTCTGAGGCTGATCCAACTGAAGTTAGCTACCCTGAACAAACACTGATTCCTCCACGGGTTTTTCATTCTGAACGTATTCCCAGGGAGCAGGCAGAATTGAACCGCTTGTCAAAGTCTGATGATTCCTTTGGTTCTCAGTTTCTGATGAGTCACACACGATCTGATGTTTCACAACAGGTTGCAGAATCAATTGATAAACTGCATGGTGGGAATGTGACTTCCCAGAGTGAGCAGGCCGCCTCATCTACAACAGCACTGTATACAAATCCTAAAACTGTTGAGGATGGACTGACACAATTTGAAAAGTATAAAGATGTTGCTGATGATATTAAAAAATTGAATTCCAATATTTCTGAAGATGGGTTGGGGCCAAAGTTATTGAAATCTGAATCAAAATGGCCAGCACCAACTTCCGTGGATGATCATGAAATAGCCGGGGTTAGGGATGGTAATAAAGACCCTGCTGTCAGTGATAGAGAAGCAGCTGGGTTGAATAATTTAACAGCAAGTCAAGGAACTTCAAGCAAACCCCATGATGACTCTCCTTCTAAGCCAACAGGATTTCATTGGGATGAGATGGCTAACCCACTCAGATCTGTTCCTGGAGGAGAATCCTCCGTTGGCGTTGGTGCTCCAGAGGGGGGAGACATCCTTATTGATATCAATGACCGCTTCCCTCGTGACTTCCTCTCTGATATATTCTCCAAGGCAAGAACCTCTGAGGGCCCCCCTGGAATCAGTCCACTGCATGGTGATGGAACTGGCTTGAGCTTGAATTTGGAGAATCATGAACCTAAGCATTGGTCATTCTTTCAAAAGTTGGCTCAAGAGGAGTTTATTAGGAAAGGTGTTTCCCTTATGGACCAGGATCATCTTGGGTATCCATCCTCACTTATGAATATTGAGGAAGGGACTCCTATAGATTACAGTTTTCCTCCTTTGAAGAGTGATGGAGTTGCCTTGGGTCCTATGGATTCCCGTATCAATTTTGAGGAGGAAATTCAGCAAGAGTCTTCCAGCATGGTTAGACCTAACACCATTGATATGCATGAAGATTATGACCCTTCTCCGGTCAAGAGAGATGAAAGCGTGCAGATGGATGGAATGGCTAACCCAAGAACGCCAGATTCGGATTATGAGGAGGTAAAATTCGAAATTCAGAACACAGGCGCACCTTTTGTTGATCCCTCTTTGGGAGATATCGATATTAGCACCTTGCAGATCATAAAGAATGAAGATCTTGAAGAGTTGAGGGAATTGGGTTCTGGCACATTTGGGACTGTTTATCATGGAAAATGGAGGGGAACAGACGTTGCTATTAAAAGAATAAAGAAGAGCTGTTTCACTGGTCGTTCATCTGAGCAAGAAAGATTGACTGTGGAGTTTTGGCGTGAAGCTGACATTCTGTCAAAGCTTCACCATCCCAATGTGGTGGCATTTTATGGCGTGGTGCAGGATGGACCAGGGGGAACACTAGCCACTGTGACAGAATTTATGGTTAATGGTTCGCTTAGGCATGTTTTGGTTTCCAAGGACAGGCATCTTGATCGTCGTAAGCGGCTCATTATTGCAATGGATGCGGCATTTGGAATGGAATACTTGCATTCAAAGAATATTGTGCATTTTGATCTGAAATGCGATAACTTGCTTGTGAACTTGAAAGATCCTCTACGACCCATTTGCAAGGTTGGTGACTTTGGCTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTGCGGGGAACCCTTCCATGGATGGCACCAGAATTATTGAATGGTAGCAGTAGTAGGGTTTCTGAAAAGGTTGATGTTTTCTCCTTTGGTATTGTCCTATGGGAGATCCTCACTGGTGAGGAGCCTTATGCCCATATGCATTATGGAGCAATCATAGGAGGCATTGTGAACAACACATTGAGACCACCTGTCCCAAGCTACTGTGATTCTGAGTGGAAATTGCTAATGGAGCAGTGTTGGGCCCCAGATCCCATTGGCCGCCCATCATTCACTGAAATTGCTAGACGATTACGGGCGATGTCTGCAGCATGCCAAACAAAACCCCAGGGTTATTCAGCAGGACCAGCACACAACCCAGTCACCAAGTAA 3717 43.58 MERNLGREMEQQKNYEQVRYNIVEARNEGLGSANQRFLHDPSSTINTNMRPPDFNITVAARPVLNYSIQTGEEFALEFMNPRQHFVPSASGDPNSATNYAVLKGFLGASHTGSESGPDIPMLTSVEKSRVQEFERKSSSVHEDKGYYDSVRSVPRISSRNDSSRGLHGYTSSGASERSSTKFKFLCSFGGKILPRPSDGKLRYVGGETRIIRMNKDISWQDLMQKTMTIYNQSHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVLEDGGSQKLRLFLFSSSDFDDGQFGLGSMEGDSEIQYVVAVNGMDLESRKNSIGLASTSDNNLDELLNLNVERETGRVATELPGPSTAPSTVNVHSSAVQSSQPLVPNFSGAYESNSKPYQGQKMRHGEAEQHQVKSGSYASPWKMNEPEKNRSLEKEASVKEAKIKTDSSVQKMNELEKIRSLESEHNVSSHPHDGSVPNYIPRDEASVVNSTADIGVPMLLPKTSKKHLESVQISKPPEAVSDGKINTFNGDGHFHTSGGAFSPGYGDSEADPTEVSYPEQTLIPPRVFHSERIPREQAELNRLSKSDDSFGSQFLMSHTRSDVSQQVAESIDKLHGGNVTSQSEQAASSTTALYTNPKTVEDGLTQFEKYKDVADDIKKLNSNISEDGLGPKLLKSESKWPAPTSVDDHEIAGVRDGNKDPAVSDREAAGLNNLTASQGTSSKPHDDSPSKPTGFHWDEMANPLRSVPGGESSVGVGAPEGGDILIDINDRFPRDFLSDIFSKARTSEGPPGISPLHGDGTGLSLNLENHEPKHWSFFQKLAQEEFIRKGVSLMDQDHLGYPSSLMNIEEGTPIDYSFPPLKSDGVALGPMDSRINFEEEIQQESSSMVRPNTIDMHEDYDPSPVKRDESVQMDGMANPRTPDSDYEEVKFEIQNTGAPFVDPSLGDIDISTLQIIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLVSKDRHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSRVSEKVDVFSFGIVLWEILTGEEPYAHMHYGAIIGGIVNNTLRPPVPSYCDSEWKLLMEQCWAPDPIGRPSFTEIARRLRAMSAACQTKPQGYSAGPAHNPVTK* 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1303635 1315494 + Vvi1g132 Vvi1g132 769332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1032 1045 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1069 1087 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1140 1162 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1184 1206 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PANTHER SERINE-THREONINE PROTEIN KINASE 94 326 - -
Vvi1g132 1238 PANTHER SERINE-THREONINE PROTEIN KINASE 505 1225 - -
Vvi1g132 1238 Gene3D Transferase(Phosphotransferase) domain 1 1038 1230 - -
Vvi1g132 1238 Pfam PB1 domain 198 281 IPR000270 GO:0005515
Vvi1g132 1238 MobiDBLite consensus disorder prediction 882 912 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 346 436 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 699 717 - -
Vvi1g132 1238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1075 1087 IPR008271 GO:0004672|GO:0006468
Vvi1g132 1238 Pfam Protein tyrosine and serine/threonine kinase 951 1213 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 CDD STKc_MAP3K-like 956 1213 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 678 692 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 883 897 - -
Vvi1g132 1238 SUPERFAMILY CAD & PB1 domains 197 287 - -
Vvi1g132 1238 Gene3D - 200 282 - -
Vvi1g132 1238 Gene3D Phosphorylase Kinase; domain 1 943 1037 - -
Vvi1g132 1238 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 94 326 - -
Vvi1g132 1238 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 505 1225 - -
Vvi1g132 1238 SMART PB1_new 196 282 IPR000270 GO:0005515
Vvi1g132 1238 MobiDBLite consensus disorder prediction 153 175 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 151 175 - -
Vvi1g132 1238 CDD PB1_UP2 185 280 - -
Vvi1g132 1238 SUPERFAMILY Protein kinase-like (PK-like) 941 1212 IPR011009 -
Vvi1g132 1238 ProSiteProfiles Protein kinase domain profile. 950 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g132 1238 MobiDBLite consensus disorder prediction 415 436 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 651 744 - -
Vvi1g132 1238 ProSitePatterns Protein kinases ATP-binding region signature. 956 981 IPR017441 GO:0005524
Vvi1g132 1238 MobiDBLite consensus disorder prediction 350 388 - -
Vvi1g132 1238 SMART serkin_6 950 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76492 PF07714 PK_Tyr_Ser-Thr 5.60E-62 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g132 - - vvi:100242423 1653.26