Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g132 ATGGAGAGAAATCTCGGAAGAGAAATGGAGCAACAGAAAAACTACGAACAAGTTCGATACAACATTGTGGAAGCCAGAAATGAGGGACTTGGGTCTGCAAATCAAAGGTTTCTTCATGATCCATCGAGCACCATTAATACCAATATGAGACCTCCTGATTTCAATATAACAGTTGCAGCTAGGCCTGTGCTGAATTACTCCATTCAGACTGGTGAAGAGTTTGCTCTCGAGTTTATGAATCCCCGGCAACACTTTGTTCCAAGTGCTTCTGGTGATCCTAACAGTGCAACTAACTATGCAGTTCTGAAGGGCTTTCTGGGAGCATCTCATACAGGGTCAGAAAGTGGGCCAGATATCCCAATGCTTACCTCTGTTGAAAAAAGTCGAGTCCAGGAGTTTGAGAGGAAGAGCTCTTCTGTGCACGAAGATAAAGGTTACTATGATTCTGTAAGATCAGTGCCTCGAATCTCATCTAGAAATGACAGTAGTCGGGGACTTCATGGCTATACCTCTTCAGGAGCATCTGAGAGATCATCGACAAAGTTCAAGTTCCTCTGCAGTTTTGGTGGTAAAATCCTCCCCCGTCCAAGTGATGGAAAGCTTAGGTATGTAGGAGGTGAAACACGTATTATTCGCATGAACAAGGACATATCTTGGCAGGATCTTATGCAGAAAACTATGACAATTTATAATCAATCTCATACGATCAAATATCAGCTTCCTGGTGAGGACCTTGATGCATTGGTTTCTGTATCTTGTGATGAGGATCTGCAAAACATGATGGAGGAGTGTAATGTACTAGAAGATGGGGGATCGCAGAAACTTAGGCTTTTTCTGTTTTCTAGTAGTGATTTTGATGATGGTCAGTTTGGCTTGGGAAGCATGGAGGGTGACTCTGAGATTCAATATGTGGTTGCTGTGAATGGAATGGACCTAGAATCAAGAAAGAACTCAATTGGGTTGGCAAGCACTTCAGATAACAATTTGGATGAGTTACTCAATCTAAATGTTGAAAGGGAGACTGGTCGAGTTGCAACAGAATTACCTGGACCTAGTACTGCACCTTCGACTGTCAATGTACATTCATCAGCAGTCCAATCTTCTCAACCACTGGTGCCGAATTTTTCTGGTGCTTATGAATCCAATTCAAAGCCTTACCAAGGTCAGAAAATGCGTCACGGAGAAGCTGAACAACATCAGGTAAAATCTGGTTCATATGCCTCTCCATGGAAAATGAATGAACCTGAAAAGAATAGGTCACTAGAAAAGGAAGCGTCTGTGAAGGAGGCAAAAATAAAAACTGATAGCTCAGTCCAAAAAATGAACGAGCTGGAAAAGATCCGGTCTTTAGAAAGTGAGCACAATGTTTCTTCACATCCACATGATGGTTCCGTTCCAAATTATATTCCTAGGGACGAAGCATCAGTTGTCAATTCTACTGCAGACATAGGAGTGCCCATGTTGCTTCCAAAAACAAGTAAAAAACACCTAGAATCTGTACAGATCTCAAAGCCCCCTGAAGCTGTAAGTGATGGGAAAATAAATACATTCAATGGAGATGGCCATTTTCATACCTCTGGTGGAGCATTTTCTCCCGGATATGGTGACTCTGAGGCTGATCCAACTGAAGTTAGCTACCCTGAACAAACACTGATTCCTCCACGGGTTTTTCATTCTGAACGTATTCCCAGGGAGCAGGCAGAATTGAACCGCTTGTCAAAGTCTGATGATTCCTTTGGTTCTCAGTTTCTGATGAGTCACACACGATCTGATGTTTCACAACAGGTTGCAGAATCAATTGATAAACTGCATGGTGGGAATGTGACTTCCCAGAGTGAGCAGGCCGCCTCATCTACAACAGCACTGTATACAAATCCTAAAACTGTTGAGGATGGACTGACACAATTTGAAAAGTATAAAGATGTTGCTGATGATATTAAAAAATTGAATTCCAATATTTCTGAAGATGGGTTGGGGCCAAAGTTATTGAAATCTGAATCAAAATGGCCAGCACCAACTTCCGTGGATGATCATGAAATAGCCGGGGTTAGGGATGGTAATAAAGACCCTGCTGTCAGTGATAGAGAAGCAGCTGGGTTGAATAATTTAACAGCAAGTCAAGGAACTTCAAGCAAACCCCATGATGACTCTCCTTCTAAGCCAACAGGATTTCATTGGGATGAGATGGCTAACCCACTCAGATCTGTTCCTGGAGGAGAATCCTCCGTTGGCGTTGGTGCTCCAGAGGGGGGAGACATCCTTATTGATATCAATGACCGCTTCCCTCGTGACTTCCTCTCTGATATATTCTCCAAGGCAAGAACCTCTGAGGGCCCCCCTGGAATCAGTCCACTGCATGGTGATGGAACTGGCTTGAGCTTGAATTTGGAGAATCATGAACCTAAGCATTGGTCATTCTTTCAAAAGTTGGCTCAAGAGGAGTTTATTAGGAAAGGTGTTTCCCTTATGGACCAGGATCATCTTGGGTATCCATCCTCACTTATGAATATTGAGGAAGGGACTCCTATAGATTACAGTTTTCCTCCTTTGAAGAGTGATGGAGTTGCCTTGGGTCCTATGGATTCCCGTATCAATTTTGAGGAGGAAATTCAGCAAGAGTCTTCCAGCATGGTTAGACCTAACACCATTGATATGCATGAAGATTATGACCCTTCTCCGGTCAAGAGAGATGAAAGCGTGCAGATGGATGGAATGGCTAACCCAAGAACGCCAGATTCGGATTATGAGGAGGTAAAATTCGAAATTCAGAACACAGGCGCACCTTTTGTTGATCCCTCTTTGGGAGATATCGATATTAGCACCTTGCAGATCATAAAGAATGAAGATCTTGAAGAGTTGAGGGAATTGGGTTCTGGCACATTTGGGACTGTTTATCATGGAAAATGGAGGGGAACAGACGTTGCTATTAAAAGAATAAAGAAGAGCTGTTTCACTGGTCGTTCATCTGAGCAAGAAAGATTGACTGTGGAGTTTTGGCGTGAAGCTGACATTCTGTCAAAGCTTCACCATCCCAATGTGGTGGCATTTTATGGCGTGGTGCAGGATGGACCAGGGGGAACACTAGCCACTGTGACAGAATTTATGGTTAATGGTTCGCTTAGGCATGTTTTGGTTTCCAAGGACAGGCATCTTGATCGTCGTAAGCGGCTCATTATTGCAATGGATGCGGCATTTGGAATGGAATACTTGCATTCAAAGAATATTGTGCATTTTGATCTGAAATGCGATAACTTGCTTGTGAACTTGAAAGATCCTCTACGACCCATTTGCAAGGTTGGTGACTTTGGCTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTGCGGGGAACCCTTCCATGGATGGCACCAGAATTATTGAATGGTAGCAGTAGTAGGGTTTCTGAAAAGGTTGATGTTTTCTCCTTTGGTATTGTCCTATGGGAGATCCTCACTGGTGAGGAGCCTTATGCCCATATGCATTATGGAGCAATCATAGGAGGCATTGTGAACAACACATTGAGACCACCTGTCCCAAGCTACTGTGATTCTGAGTGGAAATTGCTAATGGAGCAGTGTTGGGCCCCAGATCCCATTGGCCGCCCATCATTCACTGAAATTGCTAGACGATTACGGGCGATGTCTGCAGCATGCCAAACAAAACCCCAGGGTTATTCAGCAGGACCAGCACACAACCCAGTCACCAAGTAA 3717 43.58 MERNLGREMEQQKNYEQVRYNIVEARNEGLGSANQRFLHDPSSTINTNMRPPDFNITVAARPVLNYSIQTGEEFALEFMNPRQHFVPSASGDPNSATNYAVLKGFLGASHTGSESGPDIPMLTSVEKSRVQEFERKSSSVHEDKGYYDSVRSVPRISSRNDSSRGLHGYTSSGASERSSTKFKFLCSFGGKILPRPSDGKLRYVGGETRIIRMNKDISWQDLMQKTMTIYNQSHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVLEDGGSQKLRLFLFSSSDFDDGQFGLGSMEGDSEIQYVVAVNGMDLESRKNSIGLASTSDNNLDELLNLNVERETGRVATELPGPSTAPSTVNVHSSAVQSSQPLVPNFSGAYESNSKPYQGQKMRHGEAEQHQVKSGSYASPWKMNEPEKNRSLEKEASVKEAKIKTDSSVQKMNELEKIRSLESEHNVSSHPHDGSVPNYIPRDEASVVNSTADIGVPMLLPKTSKKHLESVQISKPPEAVSDGKINTFNGDGHFHTSGGAFSPGYGDSEADPTEVSYPEQTLIPPRVFHSERIPREQAELNRLSKSDDSFGSQFLMSHTRSDVSQQVAESIDKLHGGNVTSQSEQAASSTTALYTNPKTVEDGLTQFEKYKDVADDIKKLNSNISEDGLGPKLLKSESKWPAPTSVDDHEIAGVRDGNKDPAVSDREAAGLNNLTASQGTSSKPHDDSPSKPTGFHWDEMANPLRSVPGGESSVGVGAPEGGDILIDINDRFPRDFLSDIFSKARTSEGPPGISPLHGDGTGLSLNLENHEPKHWSFFQKLAQEEFIRKGVSLMDQDHLGYPSSLMNIEEGTPIDYSFPPLKSDGVALGPMDSRINFEEEIQQESSSMVRPNTIDMHEDYDPSPVKRDESVQMDGMANPRTPDSDYEEVKFEIQNTGAPFVDPSLGDIDISTLQIIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLVSKDRHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSRVSEKVDVFSFGIVLWEILTGEEPYAHMHYGAIIGGIVNNTLRPPVPSYCDSEWKLLMEQCWAPDPIGRPSFTEIARRLRAMSAACQTKPQGYSAGPAHNPVTK* 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1303635 1315494 + Vvi1g132 Vvi1g132 769332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1032 1045 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1069 1087 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1140 1162 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PRINTS Tyrosine kinase catalytic domain signature 1184 1206 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 PANTHER SERINE-THREONINE PROTEIN KINASE 94 326 - -
Vvi1g132 1238 PANTHER SERINE-THREONINE PROTEIN KINASE 505 1225 - -
Vvi1g132 1238 Gene3D Transferase(Phosphotransferase) domain 1 1038 1230 - -
Vvi1g132 1238 Pfam PB1 domain 198 281 IPR000270 GO:0005515
Vvi1g132 1238 MobiDBLite consensus disorder prediction 882 912 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 346 436 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 699 717 - -
Vvi1g132 1238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1075 1087 IPR008271 GO:0004672|GO:0006468
Vvi1g132 1238 Pfam Protein tyrosine and serine/threonine kinase 951 1213 IPR001245 GO:0004672|GO:0006468
Vvi1g132 1238 CDD STKc_MAP3K-like 956 1213 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 678 692 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 883 897 - -
Vvi1g132 1238 SUPERFAMILY CAD & PB1 domains 197 287 - -
Vvi1g132 1238 Gene3D - 200 282 - -
Vvi1g132 1238 Gene3D Phosphorylase Kinase; domain 1 943 1037 - -
Vvi1g132 1238 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 94 326 - -
Vvi1g132 1238 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 505 1225 - -
Vvi1g132 1238 SMART PB1_new 196 282 IPR000270 GO:0005515
Vvi1g132 1238 MobiDBLite consensus disorder prediction 153 175 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 151 175 - -
Vvi1g132 1238 CDD PB1_UP2 185 280 - -
Vvi1g132 1238 SUPERFAMILY Protein kinase-like (PK-like) 941 1212 IPR011009 -
Vvi1g132 1238 ProSiteProfiles Protein kinase domain profile. 950 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g132 1238 MobiDBLite consensus disorder prediction 415 436 - -
Vvi1g132 1238 MobiDBLite consensus disorder prediction 651 744 - -
Vvi1g132 1238 ProSitePatterns Protein kinases ATP-binding region signature. 956 981 IPR017441 GO:0005524
Vvi1g132 1238 MobiDBLite consensus disorder prediction 350 388 - -
Vvi1g132 1238 SMART serkin_6 950 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g132 - - - vvi:100242423 1653.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g132 . . . . . . . . . Cmo18g00250 . . . . . Cpe09g00929 . . . . . . . . . . . . . . . Cone2ag0800 . . . . . . . . . . . . Bpe02g02335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012656 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76492 PF07714 PK_Tyr_Ser-Thr 5.60E-62 CL0016 Vvi PK