Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1321 ATGGGAAACATATCTAAACAGATGACTAATAAACCACTCAACGGACGGCGCAGAGGACAAAGCAAAAGGGATCAAGCCACCCTCCAAAACGGTGTCGTTTGGACCATCACTGCACCGTTCGCCCTATACCTAGCGGACCAAACTCTCCGGCGAAGCTCAGCGCAGGTTCGATCGGAGGAAGCGAAGATGTTGGGGATTGTGAGTCGGAAGGTTTTGGGGCAGTCGTTGGGGAGGATTAGGCCTGCGGTGTGGGCATTGAGGAACTACTCGTCTGCGGAAAAACAGATGACAGTGAGGGATGCTCTAAACTCTGCACTTGATGAGGAAATGTCCGCAGATCCTAAAGTCTTTTTGATGGGTGAAGAGGTCGGGGAATACCAAGGTGCATACAAGATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCTGGTCAGATATCCGTACCTATTGTTTTTAGAGGACCAAATGGTGCTGCCGCTGGAGTTGGTGCCCAGCACTCCCAGTGTTATGCAGCCTGGTATGGCTCCTGCCCTGGGTTGAAAGTGCTGTCCCCATATTCATCTGAGGATGCCCGTGGATTGCTAAAAGCTGCTATAAGAGACCCTGATCCTGTTATTTTCCTTGAAAATGAGTTGCTGTATGGTGAATCTTTCCCTATCTCAGCAGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATAGGGAAAGCCAAGATTGAGAGAGAAGGAAGGGATGTGACTATCACAGCTTTCTCAAAAATGGTGGGCTTTGCACTCAAGGCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCCTCAGTCAGGAAAACTAACAGACTTGTAACCGTTGAAGAAGGGTTCCCTCAGCATGGTGTTGGGGCTGAGATCTGCATGGCTGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCACCAGTGGAAAGGATTGCCGGGGCTGATGTTCCCATGCCTTATGCTGCTAATCTCGAGAGAATGGCTGTCCCACAGATTGAAGATATCGTCCGAGCTGCAAAGAGAGCATGCTACAGATCCACTGCAATGGCTGCAACTGCTTGA 1290 48.14 MGNISKQMTNKPLNGRRRGQSKRDQATLQNGVVWTITAPFALYLADQTLRRSSAQVRSEEAKMLGIVSRKVLGQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRDVTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGFPQHGVGAEICMAVVEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRACYRSTAMAATA* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22122604 22131879 + Vvi1g1321 Vvi1g1321 770521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1321 429 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g1321 429 PANTHER DEHYDROGENASE RELATED 87 423 IPR027110 GO:0004739|GO:0006086
Vvi1g1321 429 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1321 429 Pfam Transketolase, pyrimidine binding domain 95 270 IPR005475 -
Vvi1g1321 429 SMART Transket_pyr_3 96 271 IPR005475 -
Vvi1g1321 429 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 94 274 IPR029061 -
Vvi1g1321 429 CDD TPP_PYR_E1-PDHc-beta_like 100 266 - -
Vvi1g1321 429 Gene3D - 288 420 IPR009014 GO:0003824
Vvi1g1321 429 Pfam Transketolase, C-terminal domain 289 411 IPR033248 -
Vvi1g1321 429 Gene3D - 95 287 - -
Vvi1g1321 429 SUPERFAMILY TK C-terminal domain-like 284 418 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1321 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - vvi:100264409 721.079
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1321 Vvi17g52 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45