Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1323 ATGAAAACTTCCCTCCGAAAGCTCCGCGGCTTCGCCCTCCACCGCCAAGACGTCCGCGAACGGAGAGTCGTGCAGCCTCTCGCGCAACTGGATGAGCTCGTTCAGGCCACGCAGGATATGCAAGACATGCGAAACTGCTATGATACCCTACTCTCTGCAGCTGCAGCGACTGCAAACAGTGCTTATGAATTCTCAGAATCATTGAAAGAACTGGGGGGTTGTCTTCTTGAGAAAACTGCATTGAATGAGGATGAAGAAAGTGGTAAAGTTTTGCTAAAGCTGGGAAAGGTGCAATATGAACTTCAGAAACTTGTAGATAGCTATCGCTCTCATATTTTCCAGACAATTGTAACACCATCAGAGTCTCTTCTTAAGGAGCTTCGGACGGTTGAGGAGATGAAGCGACAATGTGATGAAAAAAGAGACGTATATGAATACATGATAACAAGACAAAGAGAAAAAGGGAGGTCAAGAAGCGGGAGAGGTGAAACTTTTTCTTCACACCAGGTGCAAGCGGCTTGTGATGAATATGATGAGGAGGCAACCTTATTTGTTTTCCGTTTGAAATCTTTGAAGCAAGGACAATCCCGTAGCCTTCTTACACAGGCTTCTAGGCACCATGCTGCTCAGTTGTCTTTCTTCAGAAAGGCTCTCAAGTCTCTTGAGGTAATTGAGCCGCATGTAAAATTGGTCACAGAACAGCAACATATTGATTACAAGTTCAGTGGACTAGAAGATGATGATTGGGATGATGGGGAAGATGATGACGACTATGATGGGCATGATGGGGACTTAAGTTTTGACTATGGACAAATTGATCATGAACAGGATTTTGTTTCTACAGCGAGAAACTCAATGGAGTTGGATCAGGAGGACCTTACATTTCCTCAAGTTGCAACAATGGATTCTGTGAAGGAAAATCTAGACAAAAGCTATGTGGATTCTTTTGCTATTAATAGTGAAAGCAGGAAAATCAGCCAATCTGCCCCACTTTTTGCTGAGAAGAAATTTGATTCTGCATGGATGAGAGAAATGCGGCCTCTGTCAACACGCAAGCTTCGGACCTATGTACTACCCACACCAGATGATACAAAGAGTTCAGCTCCTACAAGATCAGATAGTCCGGATTCTCGCCCAATACCCACAAGTTTGAGTGGTCGTCCTCACAATTTGTGGCATTCTTCCCCCTTGGAACCAAAGTATGAAAAGATTTTGGGAGATGACAAAGTTTTTGAATCTACTGCCATGAATGCACAGTCAGTACTCAAAGAGAGCAATACTAATCATGTGTCTAGTGGACTACCCCCTCCTTTGGTTGATGGGCTTCCATTTCGGATGATAAATTCAAGTGTTGTTTCTGATACTAAGAAGGTCAAAAGATACGCTTTTTCTGGTCCATTGACAAGGAACCCATGGTCAACCAAGCCTGGTTTGTCTGCCAGTGATCCTTTGGTCTCAGTGACACAACCCCAATTGTTTTCTGGACCCCTTTTGCGGAGTCAAATGCCGCATCTATCATCATCATCATCACCTCCAAGAGTATCTCCAATTGCTTCTCCCTTTTTGTCATCACCCAAAATAAATGAGCTTCATGAGCTTCCTAGGCCCCCTTCCAGTTTGACCTTGAAACCTTCAAGACCTTCAAGTTTGATAGGTCATTCTGCCCCCTTGGTTGCCAGTGGTCCCAACCTTTCTGCTACAAATAAATTGGTGGTGTCAAGTACAGCATCTCGGTTGCCATTACCTCTGCAAGCTGTTCCTCGCAGTCTCTCCACCCCCTCAAGTGGTCAGAAACTGAAGATACCACGTGTTTCTGGACCATCAGAAGCTCCTCAGAATTCAGAGATGGCTGAAAATGTCACTTCACCACCTCTAACACCAATTTCTTTATCAAACATCCAGCCGGCATCAACTTCTTCTGTCAATGATACTAGTCAACTTGGAGGTGCTGAATGA 1956 44.43 MKTSLRKLRGFALHRQDVRERRVVQPLAQLDELVQATQDMQDMRNCYDTLLSAAAATANSAYEFSESLKELGGCLLEKTALNEDEESGKVLLKLGKVQYELQKLVDSYRSHIFQTIVTPSESLLKELRTVEEMKRQCDEKRDVYEYMITRQREKGRSRSGRGETFSSHQVQAACDEYDEEATLFVFRLKSLKQGQSRSLLTQASRHHAAQLSFFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDDGEDDDDYDGHDGDLSFDYGQIDHEQDFVSTARNSMELDQEDLTFPQVATMDSVKENLDKSYVDSFAINSESRKISQSAPLFAEKKFDSAWMREMRPLSTRKLRTYVLPTPDDTKSSAPTRSDSPDSRPIPTSLSGRPHNLWHSSPLEPKYEKILGDDKVFESTAMNAQSVLKESNTNHVSSGLPPPLVDGLPFRMINSSVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVSVTQPQLFSGPLLRSQMPHLSSSSSPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSRPSSLIGHSAPLVASGPNLSATNKLVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRVSGPSEAPQNSEMAENVTSPPLTPISLSNIQPASTSSVNDTSQLGGAE* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22185831 22196323 + Vvi1g1323 Vvi1g1323 770523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1323 651 Pfam BAR domain 30 226 IPR004148 GO:0005515|GO:0005737
Vvi1g1323 651 SUPERFAMILY BAR/IMD domain-like 31 229 IPR027267 -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 357 395 - -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 360 390 - -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 587 651 - -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 584 651 - -
Vvi1g1323 651 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 641 IPR037488 -
Vvi1g1323 651 Gene3D Arfaptin homology (AH) domain/BAR domain 27 242 IPR027267 -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 498 517 - -
Vvi1g1323 651 CDD BAR 62 227 - -
Vvi1g1323 651 MobiDBLite consensus disorder prediction 498 548 - -
Vvi1g1323 651 PANTHER BNAA05G10100D PROTEIN 1 641 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1323 - - - vvi:100254108 1220.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1323 Vvi14g1125 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1323 Blo01g00161 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00167 Cam06g0045 Cec06g0187 Cco06g0180 Clacu06g0182 Cmu06g0177 Cre06g0950 . . . . . . Chy11g01821 Cme11g02355 . . . . . . . . . . . . . . . Cpe17g00934 . Bhi12g02403 Tan06g1458 . . . . . . . . . . . . Lsi09g01757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003357 3 3 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 49