Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1326 ATGCAGGAAAAAGGTGTCCCTCTCCTCCCAAATTCACCATGTGCCCTTCATCCCCTTGCTGCCCTTTCCTATCCTATCATTTCATCAATAAGTCTCACTTCTGATAGAAAAAAAACAACAAAACATACATGTACAAATAACCAATTTTGTTATGACACTTTTCTGCAACTACTGACCCATGCTCCTCATGTACCCCATTGCTTAATATATTACAAAAGGTTTTGGTGTTCTGGGTTCGTTCAAGCTGTTGTGAGGATTGAGCTGTCGCAGATTTTGTTGTGTTTTAGGGTGTCGAAGAGGCAGAGCCCGAGCTGTGGGAAGCACAAACAAGTGATATTCAAACAGTTGGGGCATGTAGGGGAATCTATTGGTATAGAAAATGGTGGAGTATTGGATGTTGATCATCAGGCATTGGAGCAGCAAACACCATTCACATCTTTGCTTATGTTACCAAATCGCGCCACCACCGGCGGAGTGATTTTGTGGGATAATAATCCCAGTGATCAAAGCACTCAGATATGGGATTTTCATTTAGGACACTCAAGGGGTTATGAAGAATGTGGTCTATTAGAAGCCGAATATGGTGTTAATGATGCAGGATTCGTAATCAAGAGTTACAGTGAGCTTATGAAAGAAACATCATTCACAAATACAAAGGTGGTGGGGGAAATGTATGATATAAATTACTCCATGACACATGAAGATATCACATCATTTAATAATAACTCAAATAACCCAACAGCAAGCCAGGGAGCAGCAACTTCTGAGAGCAACAACTTACCTATTGCACGGCCGTCATCAGGTTCAGCTTTTGCTAAACCTAAAAGCTTTAGTGGATCGAAGGACATTGAGTTAACAGAACAATCTATTCTTATGAGAGGTGAAAGTGGAAGAACAGCAGCAACAACGAAGGTGGATTTGGAGCAGCTGGCACAGAATAGAGGTAATGCCATGCTACGTTACAAGGAAAAGAAGAAAACTAGAAGATATGATAAGCATATACGGTATGAGTCAAGGAAGGCAAGGGCTGATACTAGGAAGCGAGTGAAGGGTCGGTTTGTGAAGGCTACTGAAGCTCCGGATGGTTGA 1089 41.78 MQEKGVPLLPNSPCALHPLAALSYPIISSISLTSDRKKTTKHTCTNNQFCYDTFLQLLTHAPHVPHCLIYYKRFWCSGFVQAVVRIELSQILLCFRVSKRQSPSCGKHKQVIFKQLGHVGESIGIENGGVLDVDHQALEQQTPFTSLLMLPNRATTGGVILWDNNPSDQSTQIWDFHLGHSRGYEECGLLEAEYGVNDAGFVIKSYSELMKETSFTNTKVVGEMYDINYSMTHEDITSFNNNSNNPTASQGAATSESNNLPIARPSSGSAFAKPKSFSGSKDIELTEQSILMRGESGRTAATTKVDLEQLAQNRGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKATEAPDG* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22216360 22221088 - Vvi1g1326 Vvi1g1326 770526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1326 362 Pfam CCT motif 314 356 IPR010402 GO:0005515
Vvi1g1326 362 MobiDBLite consensus disorder prediction 238 277 - -
Vvi1g1326 362 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 96 361 - -
Vvi1g1326 362 MobiDBLite consensus disorder prediction 238 265 - -
Vvi1g1326 362 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
Vvi1g1326 362 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 96 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1326 - - - vvi:100242118 515.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1326 Vvi14g1116 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1326 . . . Bda11g00378 Bpe13g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00287 . . Blo02g00202 . . Bda11g00378 Bpe14g00807 . . Bma06g01334 . . . . . . . . Cpe03g01212 . . . . . . . . . . . . . . . . Chy07g01493 Cme07g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004278 2 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14483 PF06203 CCT 2.80E-16 CL0281 Vvi TR