Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1327 ATGGGGATCCCCTACCCGGCGGTCTACCATCCTAACCAGAACCCCTACCAGGCCGGTGTCATTCCGCCGAACGCCTTCGTCGGCGATCCCAAGGGAGTTCCGATTCAGCAGACCATTTTCCGAGACACTCCCGCTCCTTTCAACTGCGTCTACTGCGGCAGCTCCGGCGTTACCACCGTAAAGTCGAAACCAAGCCTGGCAGCTGTTGTCGGTTGTATGATGCCGATGATGCTTGGAATTTGCTTTCTTTGTCCTTCAATGGACTGCCTCTGGCATAAATATCATTATTGCCCAAGCTGCAAGGAAAAGGTTGCCGATTTTGAGAAATCAGATCCCTGTGTAGTGATGGATCCTCCACAATGGACACAGCAGAGCTTTGCATTGCCTGCATCATATTGA 399 52.13 MGIPYPAVYHPNQNPYQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFALPASY* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22235755 22240368 - Vvi1g1327 Vvi1g1327 770527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1327 132 ProSiteProfiles LITAF domain profile. 29 109 IPR006629 -
Vvi1g1327 132 PANTHER BNAC09G43880D PROTEIN 8 122 - -
Vvi1g1327 132 Pfam LITAF-like zinc ribbon domain 42 106 IPR006629 -
Vvi1g1327 132 PANTHER LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR 8 122 IPR037519 -
Vvi1g1327 132 SMART litaf 44 109 IPR006629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1327 K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor - vvi:100242123 293.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01823 Cme11g02358 . . . . . . . . Sed07g0128 . . . . . . Cpe17g00936 . Bhi12g02399 Tan06g1453 Cmetu11g2573 . . . . . . . . . . . Lsi09g01760 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009739 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33