Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1330 ATGGGGCCACCAGCAGTGCCCACTGTACACCCAGACAACCAGAAGGCAGCCATGTGGAAGGGTGATCACCAGCAGATCTACCACCAGCCATACCTTCAGTTCGCCCCAGTTGAGAAGCCCAGAAACAACCCTTTTGAGCCTGTCATTCATACCTTCAATTCATGGAGCAGAAAGGCTGAGATCATTGCCAGAAACATCTGGCACAACTTGAAAATGGGGCACTCGGTGTCAGAAACTGCATGCGGAAAGGTGAATTTGAGGGCAAAGGCCATGACAAGGGGTGGATTTGAGTCTCTCTACAAGCAGACTTTCGCAACAGATCCCAACGAGAGGTTGAAGAAGACCTTCGCCTGTTACCTCTCCACCTCCACTGGCCACGTTGCCGGCACCCTCTATCTCTCAACCGCCCGTTTGGCTTTCTGCAGTGACCGTCCCTTGTCCTTCACTGCCCCATCTGGGCAGGGGGCTTGGAGCTACTACAAGGTTGTGATACCTTTGGGGAACATAGGCACCGTCAACCCGGTGACTATGCGAGAAAATCCATCGGAAAAGTACATCCAGATTCACACCATTGATGGCCATGACTTCTGGTTCACGGGGTTCGTCAATTTTGAGAAGGCGACCCAACATCTCTTGAGCATTGTCTCAGAGTTCAGAGCCCATGCATGA 669 52.17 MGPPAVPTVHPDNQKAAMWKGDHQQIYHQPYLQFAPVEKPRNNPFEPVIHTFNSWSRKAEIIARNIWHNLKMGHSVSETACGKVNLRAKAMTRGGFESLYKQTFATDPNERLKKTFACYLSTSTGHVAGTLYLSTARLAFCSDRPLSFTAPSGQGAWSYYKVVIPLGNIGTVNPVTMRENPSEKYIQIHTIDGHDFWFTGFVNFEKATQHLLSIVSEFRAHA* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22277020 22278198 - Vvi1g1330 Vvi1g1330 770530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1330 222 SMART gram2001c 98 176 IPR004182 -
Vvi1g1330 222 PANTHER GEM-LIKE PROTEIN 5 1 220 - -
Vvi1g1330 222 CDD PH-GRAM_GEM 109 217 - -
Vvi1g1330 222 Pfam GRAM domain 100 214 IPR004182 -
Vvi1g1330 222 Gene3D - 96 217 IPR011993 -
Vvi1g1330 222 PANTHER GEM-LIKE PROTEIN 2 1 220 IPR037848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1330 - - - vvi:100250606 468.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1330 Vvi14g1114 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1330 . . . Bda11g00376 Bpe13g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00260 . . Blo02g00203 . . Bda11g00376 Bpe14g00808 . . Bma06g01332 . . . . . . . . Cpe03g01197 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005307 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 38