Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1333 ATGTTTTCTTGGATTCTATGCTATGCCTTCTTTTGTAGAGCATTGGGAGCACCACAAATGCAGTTGAAGATGGCGACTCTCTCCAACCTCCTTGGCCCTCCGGAGCTACGCCGAGGAGCCAGTATGCACCAGCCACAAGATCCTCCCGCCGCCACCGGCGACGCCTTCATGGACTTGATGGTGGCGAACTTCAACTCAGCGAGGGTACTGCCAAAACCTCCGATGGGTTACACTGAGAACGCGTCCGCAACATTTCTCTCCTCCGGCAACCCCTGCCTTGACTTCTTCTTCCACGTCGTCCCCGACACTCCGCCGGAGGTTCTGAAGCAGCGGCTGGAGCTGGCCTGGAGCCACAACCCCCTCACCACCCTGAAACTTATCTGTAATCTAAGAGGTGTTCGCGGCACCGGCAAGTCCGATAAGGAGGGCTACTATACGGCGGGGCTTTGGCTCCACGGCCTCCATCCGAAAACGTTCGCGTGTAATGTAGAGTCGTTTGCCAATTTTGGGTACTATAAGGACCTGCTGGAGATTCTCTTCAGGCTGCTGGAAGGGCCCGACGTCCGGCGAATTGCGAAGAGTCAGCGGAGGATGAAGAACAAGAAGAGGGGCAACTATTTTGTACGAAAATTCATATTCGGACATGGCAAGTTGGGGAAGAATAAGAAGACGAAGAAAGGGAAACATAGGAGGTTGGCGATGGCGAAGAAGGCGGTGGAAAGGTATGGACGTGATCCTGATTACAGGTTCCTCCACGATCGGATCTCTGATCTCTTCGCCGAACATCTCAAGTCCGATCTCCAGCTGCTGAACTCCGGCAATGTCAACAAGATCAGCCTCGCCGCCAAGTGGTGCCCCTCCATTGACTCTTCGTTTGATCGGTCGACTCTTCTCTGCGGGAGCATCGCTCGGAAAATTTTCCCAAAATCTGATCCTGAATACGAAGGAGTTGAAGATGCTCATTACGCCTACAGAGTCCGGGACCGCCTGAGAAAGCAAGTGCTGGTCCCTCTCCGTCGAGCCCTGGAGCTGCCGGAGGTATACATGGGCGCGAACCGCTGGAGCGAGCTCCCCTACAACAGGGTCGCTTCCGTAGCCATGAAAACCTATAAAGAACGTTTTATTAAGCACGACGAAGCCCGTTTCTTTGAGTACCTTAGCAGTGTCAGGGCCGGAAAAGCCAAGATCGCCGCGGGCGCCCTGCTCCCACACGAGATAATCTCGTCATTGGAAGACGAAGATGGTGGGCAAGTTGCAGAGCTTCAATGGCAGAGAATGGTCGAGGACGTCTCCAAGAAGGGCAAACTGAAAAACTGCATCGCCGTCTGCGACGTCTCCGGCAGCATGTTCGGGATCCCAATGGAGGTCTCCGTCGCTCTCGGCATACTCGTCTCCGAACTGAGCGAAGATCCATGGAAAGGCAAGGTCATCACTTTCAGCAAGACCCCAGAGCTCCACATGATCACCGGCGAAGACCTCCGCTCCAAGGCGAATTTCGTGAGAGAAATGAACTGGGGAATGAACACAGACTTCCAGAAAGTGTTTGATCTGATCCTGCAAGTGGCGGTGAACGGGAAGCTGAGCCAAGACGCCATGATCAAGAGAATCATCGTCTTCAGCGACATGGAGTTCGACCAAGCTTCTGCAAACAGTTGGGAGACCGACTATGAAGCCATAAAGAGGAAGTTCAGGGAGAGTGGGTATGAGGCGGCCGTGCCGGAGATAGTGTTCTGGAATCTCCGGGACTCTCGGGCAACGCCGGTGCCGGGAACAGAGAAAGGGGTGGCGCTGGTGAGTGGGTTTTCAAAGAATCTTCTGACGTTGTTCTTGGAGAATGGTGGGGTTATGAATCCGGAGGCCGTCATGGAAGCCGCCATCTCTGGGGAAGAATACGATAAACTGATTGTAATGGACTGA 1917 53.99 MFSWILCYAFFCRALGAPQMQLKMATLSNLLGPPELRRGASMHQPQDPPAATGDAFMDLMVANFNSARVLPKPPMGYTENASATFLSSGNPCLDFFFHVVPDTPPEVLKQRLELAWSHNPLTTLKLICNLRGVRGTGKSDKEGYYTAGLWLHGLHPKTFACNVESFANFGYYKDLLEILFRLLEGPDVRRIAKSQRRMKNKKRGNYFVRKFIFGHGKLGKNKKTKKGKHRRLAMAKKAVERYGRDPDYRFLHDRISDLFAEHLKSDLQLLNSGNVNKISLAAKWCPSIDSSFDRSTLLCGSIARKIFPKSDPEYEGVEDAHYAYRVRDRLRKQVLVPLRRALELPEVYMGANRWSELPYNRVASVAMKTYKERFIKHDEARFFEYLSSVRAGKAKIAAGALLPHEIISSLEDEDGGQVAELQWQRMVEDVSKKGKLKNCIAVCDVSGSMFGIPMEVSVALGILVSELSEDPWKGKVITFSKTPELHMITGEDLRSKANFVREMNWGMNTDFQKVFDLILQVAVNGKLSQDAMIKRIIVFSDMEFDQASANSWETDYEAIKRKFRESGYEAAVPEIVFWNLRDSRATPVPGTEKGVALVSGFSKNLLTLFLENGGVMNPEAVMEAAISGEEYDKLIVMD* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22304969 22308253 - Vvi1g1333 Vvi1g1333 770533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1333 638 Gene3D von Willebrand factor, type A domain 424 611 IPR036465 -
Vvi1g1333 638 Pfam Domain of unknown function (DUF2828) 78 622 IPR011205 -
Vvi1g1333 638 PANTHER OS06G0652100 PROTEIN 24 638 IPR011205 -
Vvi1g1333 638 PIRSF T31B5_30_vWA 547 638 IPR011205 -
Vvi1g1333 638 PIRSF T31B5_30_vWA 25 551 IPR011205 -
Vvi1g1333 638 SUPERFAMILY vWA-like 438 568 IPR036465 -
Vvi1g1333 638 CDD vWFA 442 567 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1333 - - - vvi:100257506 1200.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1333 Blo01g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0659 Cone15ag0670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008658 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 33