Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1336 ATGTCGAGAGCCGCCATGGAACTTGATTTCTTCGGAATGGAGAAGGACGGCGCCACCGCCAAATCTCAGTTCCAGAGGTTCTCGGATCGCCGGAGAAGCTTTCGAGGAATGCAAAGCGCCATTTCCAAGATCAATCCGGATCTTCTCAAGACCGTGATCGCCTCCGGCTCTGTATCGCAGGCTCCGAAGAATAATCCGCCGTTCGCTTCCCGGAAGTCGTTCTCGGTGCCGTCCACTCCGAAAGCTGACCAGAATTACCTTCCGGCGTTGCCGGTTTACAGTCCTGTTTTCAGGCCTGTGAGTGCCGAAACAACTCCAATAACCATTTTCTATAATGGCACCGTCTCCGTTTTTGATGTCTCTCCAGAGCAGATCGAGAGTATCATGAAGCTCGCTTTGGACGGAAGCACCAAGACTGTGGAACCTGCTGATTCGAAACTTGCAATTCCTCCAAACGAGGAGCAGCAGCTTCTCGAGACTCTCAACGGAGATCTGCCACTGGCACGAAGGAAGTCATTGCACAGGTTTCTAGAGAAGCGTAAAGAGAGGTTGACTTCAGTGTACCCATATCCACCTCACATCCAATACGCGGTTTCAGACCAGGAAAAGACCACCATGGAGGAGCTGTTCCGGGCCTAG 639 52.27 MSRAAMELDFFGMEKDGATAKSQFQRFSDRRRSFRGMQSAISKINPDLLKTVIASGSVSQAPKNNPPFASRKSFSVPSTPKADQNYLPALPVYSPVFRPVSAETTPITIFYNGTVSVFDVSPEQIESIMKLALDGSTKTVEPADSKLAIPPNEEQQLLETLNGDLPLARRKSLHRFLEKRKERLTSVYPYPPHIQYAVSDQEKTTMEELFRA* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22328029 22331014 + Vvi1g1336 Vvi1g1336 770536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1336 212 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 7 190 IPR040390 -
Vvi1g1336 212 PANTHER PROTEIN TIFY 9 7 190 - -
Vvi1g1336 212 MobiDBLite consensus disorder prediction 59 80 - -
Vvi1g1336 212 Pfam tify domain 102 132 IPR010399 -
Vvi1g1336 212 ProSiteProfiles Tify domain profile. 100 134 IPR010399 -
Vvi1g1336 212 SMART tify_2 100 134 IPR010399 -
Vvi1g1336 212 Pfam Jas motif 166 190 IPR018467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1336 K13464 JAZ; jasmonate ZIM domain-containing protein - vvi:100262641 410.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1336 . . . Bda11g00375 . . . . . . . . . . . . . . . . . . . . Cla06g00163 Cam06g0050 Cec06g0182 Cco06g0175 Clacu06g0176 Cmu06g0171 Cre06g0945 Cone14ag0658 Cone15ag0668 . . . Csa04g00246 . Cme11g02360 . . . Bda11g00375 . . . Bma06g01331 Sed07g0131 . . . . . . . Cpe03g01189 Bhi12g02397 Tan06g1451 Cmetu11g1663 . . . . . . . . . . . . . Chy07g01528 Cme07g01972
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008849 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14484 PF06200 tify 6.10E-12 No_clan Vvi TF