Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1337 ATGGTTTGTCGAAACAATTTTTTGATTCAATTTTCTCGACGTGGGTTCTCAGTCCAATCTGCAAAACTGACTCAAGAATTCGTGGGTCATGTTTCCCCTTCAGAGTTCAATTCACATGCATACGCCAATGCGCTTCAAGATTGTATCCAAAAAGATGAACCCAGTAGAGGAAAGGGTCTGCATTGTGAGATTCTGAAAAGGGGTGGTTGCTTGGACTTGTTTGCTTGGAACATTCTCCTCAATATGTACGTAAAGTCAGATTTTTTGTGTGATGCGAGTAAATTGTTTGATGAAATGCCTGAAAGAAATACAATCTCATTTGTTACTTTAATTCAAGGTTATGCAGAGTCTGTTCGATTTTTGGAGGCGATTGAGTTGTTTGTTAGATTGCATAGGGAGGGTCATGAGCTTAATCCGTTTGTTTTTACCACAATTCTGAAGTTGCTTGTGAGTACGGACTGTGGGGAGTTAGGTTGGGGCATCCATGCCTGCATTTTTAAGCTTGGTCATGAGTCCAATGCATTTGTAGGGACTGCACTTATTGATGCTTATTCAGTTTGTGGACGTGTTGATGTTGCCAGAGAAGTGTTTGATGGGATTCTTTACAAGGACATGGTTTCTTGGACTGGGATGGTAACTTGTTTTGCGGAGAATGATTGTTTCAAAGAGGCTTTGAAGCTCTTTTCTCAAATGAGGATGGTCGGGTTTAAGCCAAATAACTTTACATTTGCTAGTGTGTTTAAGGCTTGTCTTGGTTTAGAGGCATTTGATGTGGGGAAGAGTGTGCATGGGTGTGCCTTAAAATCTCGCTATGAGTTGGATCTATATGTAGGTGTTGCTTTGCTTGATTTGTATACTAAGTCTGGAGACATCGATGATGCTCGGCGGGCATTTGAGGAGATTCCTAAAAAGGATGTGATCCCTTGGAGTTTTATGATTGCACGTTATGCTCAAAGTGACCAGAGCAAGGAGGCTGTGGAAATGTTTTTTCAGATGAGGCAAGCTTTAGTGCTTCCTAATCAGTTTACTTTTGCGAGTGTGCTGCAAGCATGTGCAACTATGGAGGGTTTAAATTTGGGAAATCAAATACATTGCCATGTAATCAAGATTGGCCTTCACTCTGATGTTTTTGTTTCAAATGCCTTAATGGATGTCTATGCAAAATGTGGAAGGATGGAGAACTCAATGGAACTTTTTGCGGAGTCACCACATAGGAATGATGTGACCTGGAACACGGTGATCGTTGGGCATGTGCAGTTAGGGGATGGGGAGAAGGCTTTAAGATTGTTTCTCAATATGCTTGAATACCGAGTGCAGGCAACTGAAGTAACATACTCTAGTGCTCTTCGTGCTTGTGCTAGCTTAGCAGCATTGGAGCCAGGACTTCAGATTCATTCCTTGACAGTCAAACCTGACAAGTTAACTTTTGTTGGTGTACTATCAGCATGCGCCAATGCAGGCCTTTTAGATCAAGGCCAAGCTTATTTTACTTCAATGATACAAGACCATGGTATTGAACCTTGCATAGAGCACTATACATGCATGGTGTGGCTGTTAGGTCGAGGAGGCCATCTTGACAAGGCTGTCAAGTTGATTGACGAAATTCCATTTCAGCCTAGTGTTATGGTTTGGCGTGCTTTACTTGGAGCTTGTGTGATCCATAATGACATTGAGCTTGGGAGAATTTCTGCTCAGCGTGTGCTTGAGATGGAACCCCAAGACAAGGCTACCCACGTGTTACTGTCTAACATGTATGCCACTGCAAAGAGATGGGACAATGTTGCCTCTGTTAGGAAAAACATGAAAAGAAAAGGAGTGAAGAAGGAACCAGGCCTTAGTTGGATTGAAAGCCAGGGCACAGTTCATTCTTTCACTGTGGGGGATACTTCACACCCTGAGGTGAGAGTGATTAATGGGATGCTGGAGTGGTTGCACATGAAAACCAAGAAGGCAGGCTACATTCCAAACTATAATGTTGTTTTGCTTGATGTGGAGGATGAAGAAAAGGAACGCCTCTTGTGGGTACACAGTGAAAGATTAGCTCTTTCTTTTGGGATAATTAGGACACCATCTGGAAGCCCCATTAGGATAATGAAAAATCTACGAATATGTGTGGATTGCCATGCTGCAATTAAGTGTATATCAAAGGTTGTGCAGCGAGAAATTGTTGTCAGAGACATCAATCGATTCCATCACTTTCAAGAAGGTTTATGCTCTTGTGGTGATTATTGGTGA 2235 42.24 MVCRNNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22336321 22338766 + Vvi1g1337 Vvi1g1337 770537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1337 744 Pfam PPR repeat 511 535 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 75 103 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 309 334 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 280 305 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 106 134 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 178 199 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat 380 401 IPR002885 -
Vvi1g1337 744 Pfam E motif 554 616 IPR046848 -
Vvi1g1337 744 Gene3D Tetratricopeptide repeat domain 161 254 IPR011990 GO:0005515
Vvi1g1337 744 Gene3D Tetratricopeptide repeat domain 255 356 IPR011990 GO:0005515
Vvi1g1337 744 Gene3D Tetratricopeptide repeat domain 17 157 IPR011990 GO:0005515
Vvi1g1337 744 Gene3D Tetratricopeptide repeat domain 357 459 IPR011990 GO:0005515
Vvi1g1337 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vvi1g1337 744 Gene3D Tetratricopeptide repeat domain 460 644 IPR011990 GO:0005515
Vvi1g1337 744 Pfam PPR repeat family 406 453 IPR002885 -
Vvi1g1337 744 Pfam PPR repeat family 203 250 IPR002885 -
Vvi1g1337 744 PANTHER OS01G0913400 PROTEIN-RELATED 138 470 - -
Vvi1g1337 744 PANTHER OS01G0913400 PROTEIN-RELATED 30 132 - -
Vvi1g1337 744 PANTHER OS01G0913400 PROTEIN-RELATED 469 687 - -
Vvi1g1337 744 TIGRFAM PPR: pentatricopeptide repeat domain 408 439 IPR002885 -
Vvi1g1337 744 TIGRFAM PPR: pentatricopeptide repeat domain 206 239 IPR002885 -
Vvi1g1337 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi1g1337 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Vvi1g1337 744 PANTHER - 30 132 - -
Vvi1g1337 744 PANTHER - 138 470 - -
Vvi1g1337 744 PANTHER - 469 687 - -
Vvi1g1337 744 Pfam DYW family of nucleic acid deaminases 652 744 IPR032867 GO:0008270
Vvi1g1337 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1337 - - - vvi:100253986 1325.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01185 . . . . . . . . . . . . . . . . . Cme07g01977
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010173 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 2 1 1 0 1 26