Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1341 ATGTTTCGCTTTCGGCCTCGTGATAGCGACGCCAGTAAGACGAGCAGAGAAGCCATTTCCCTGCTTTTCCTGCTCATCTTCATCCATTTCTACAACGTAAAATGCCAAGAAAACATTATCAACCGCGTCTCCACTGATTCTTCTCCATCTCCATCTAGAGAAGCAGAATTCAAAAGTGGTCTCAAGAAGATAATCCTCAGCATAGTATTCGGGGTTTTAACCGGTTTGCTCTCCGCCGCCTTGTGCGCCGGCATAGTCCACTGCGTCGTCCGCTACATGAACCGAACCCCAATTCTCAAAGGCCCAGTTGTATTCTCCCCCAAAATCGCCCCCAAAACGGTCCAATCCGCGCTTGACATCAAGAGGCTTGAACCCTTTGAGACTGGCTCACCAGAAACCCAAAGTAAATCCGTGAAGAGAAGAATTCAGCAGGAACTAGAAATGCTAGCCAACTTGAGACATAGAAATTTGATGAGTTTGCGGGCTTATGTCCGCGATTCCGATAGGTTTTCACTGGTCTATGACTATGTCCCCACTGGGAGTCTTGAGGACGCCATGAATAGAGTTAGGGAGAATCAGCTGCAGCTTAGTTGGGAGGTTCGGCTTAGGATTGCAGTTGGGGTGATCAAGGGTCTTCAGTATCTTCATTTCAGCTGCGTTCCTAGAATTTTACACTATAATCTGAAGCCAACCAATGTAATGTTGGATGCAGAGTTTGAGCCTAGATTGGCAGATTGCGGGCTGGCTAAGCTCATGCCTAATTTGGATAGAGCTGCGTCGGGGTATAGCGCTCCAGAGTGTTTCCAGAATTGCAGGTATACTGAGAAGAGCGACGTGTTCAGCTTTGGGGTCATACTGGGGGTTCTGCTAACTGGTAGAGACCCCATGGATCCATTCTTTAGTGAAGCAGCAGGTGGGGGGAGTTTGGGACGGTGGCTTCGCCATTTGCAGCAAGCAGGAGAGGCAAGAGAGGCATTGGATAAGAGCATCCTTGGGGAAGAAGTAGAGGAAGATGAGATGCTGATGGCAGTGAGAATTGCTGTTGTTTGCCTATCCGATTTGCCTGCAGATCGGCCTTCCAGCGATGAGCTCGTCCCAATGCTCACCCAACTGCACAGCTTTTGA 1125 49.07 MFRFRPRDSDASKTSREAISLLFLLIFIHFYNVKCQENIINRVSTDSSPSPSREAEFKSGLKKIILSIVFGVLTGLLSAALCAGIVHCVVRYMNRTPILKGPVVFSPKIAPKTVQSALDIKRLEPFETGSPETQSKSVKRRIQQELEMLANLRHRNLMSLRAYVRDSDRFSLVYDYVPTGSLEDAMNRVRENQLQLSWEVRLRIAVGVIKGLQYLHFSCVPRILHYNLKPTNVMLDAEFEPRLADCGLAKLMPNLDRAASGYSAPECFQNCRYTEKSDVFSFGVILGVLLTGRDPMDPFFSEAAGGGSLGRWLRHLQQAGEAREALDKSILGEEVEEDEMLMAVRIAVVCLSDLPADRPSSDELVPMLTQLHSF* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22414828 22417602 - Vvi1g1341 Vvi1g1341 770541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1341 374 Gene3D Phosphorylase Kinase; domain 1 106 177 - -
Vvi1g1341 374 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 17 119 - -
Vvi1g1341 374 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 120 372 - -
Vvi1g1341 374 Gene3D Transferase(Phosphotransferase) domain 1 178 373 - -
Vvi1g1341 374 SUPERFAMILY Protein kinase-like (PK-like) 135 368 IPR011009 -
Vvi1g1341 374 Pfam Protein kinase domain 134 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1341 374 ProSiteProfiles Protein kinase domain profile. 75 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1341 374 PANTHER LEUCINE RICH REPEAT KINASE 2 17 119 - -
Vvi1g1341 374 PANTHER LEUCINE RICH REPEAT KINASE 2 120 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1341 - - - vvi:104880871 691.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1341 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00159 . . . . . . Cone14ag0652 Cone15ag0664 . . . Csa04g00228 Chy11g01830 Cme11g02366 . . . . . . . Bma06g01329 . . . . . . . . Cpe03g01179 Bhi12g02390 . . . . . . . . . . . . . Lsi09g01767 . Chy07g01542 Cme07g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009395 0 1 0 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76493 PF00069 Pkinase 1.30E-30 CL0016 Vvi PK