Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1342 ATGCATTTCGCGAAGCTCGATGACTCTCCTATGTTTCGGAAGCAGATACAATGCTTGGAGGAAAGTGCTGAATCATTGAGGGAGAGAAGTCTGAAGTTTTACAAAGGATGTCGAAAATACACTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATTGCATTGAGAGAGATTGGGACATACAAGGAAGTTCTTCGCTCCCAGGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGGAAGCAAGAAAGCGTTTTGACAAAGCTAGCCTCCTATATGATCAGGCTCGTGAGAAGTATCTGTCGCTGAGGAAAGGCACAAAAAGTGATATAGCTACTGTTCTGGAGGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGCTTTAATCTGGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAGGGGTATGAGCTGTTGCATCAAATGGAACCTTATATCAATCAGGTTTTGACTTATGCACAACAATCAAGAGAAAGGTCCAAATATGAACAGGCAGCCCTTAATGAAAAGATGCAAGAGTTCAAAAGACAGATTGATCGAGAAAGCAGGTGGCCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGACGGTATACAAGCCATTGGCAGAAGCTCACATAAAATGATAGAGGCTGTGATGCAATCTGCAGCCAAGGGAAAGGTTCAAACCATCCGACAAGGTTACCTCTCAAAACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTGGATCTGGCAGTCAGCATTCAGGTCAGAGGAATAGTTCTGAACTTGGTTCTGGACTGTTGAGTCGGTGGCTTTCTTCCCATTATCATGGTGGAGTACATGACGAGAAATCTGTTGCTCATCACACAGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGTGTCTGCCTATTAGTCCAATGGGAAGCAGTCATCACCGCTCTGCAAGTGAGAGTAGTTCATATGAAAGTACTGATTTCGATCACACAGCAGTTGAAGAATACACATCCGAGAGGAGCTCAGCCACTGCACATCATGAGCGCCCATCAAAAGGTTTGCAACAGATACGGTCCTGCATAAAATCCGAGAAGCCAATTGATGTATTGCGAAGAGTATGTGGGAATGATAAATGTGCTGATTGTGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGGTAAGATCGCTGACACTTGATGTTAAAGTGTGGGAGCCTTCTGTATTAACTCTGTTTCAGTCTCTGGGCAATACCTTCGCTAATTCAGTTTGGGAGGAACTATTGCAATCAAGAAATGCCTTTCAGGTTGATCTTGTTCCTACAGGCTTATACAAGTCAGATAAACCACAGTTGCATTTTATCAGCAAGCCAAGTCATGCTGATTCTATTTCAATTAAGGAGAAATACATACATGCAAAGTATGCAGAAAAGCTTTTTGTTCGCAAGCCAAAAGACAATCAATATCCTTGTTTAGTGACACAACAAATCTGGGATGCTGTTCGTACTAATGACAAGAAAGCAGTATATCGTTACATTGTTAACTCTGAAGCCGATGTGAATGTTGTGTATGAGCAAACATTATGTAACTCTTCTTTAACCCTTGCCAAAGTAATGCTGTTGCAAGAGCAGACAAACCTTGACCACAGCTCTAGGTGCTTGACAGGGGATTCATTTGACAAGTCATCTGTAAGCTCTTCGAATGCAGCAAGTACAAGTGAAGGCCAGACCATGGAGGATTTTGATGGGTGGTCCCTGCTTCACCTTGCTTGTGAAACTGCAGACATTGGCATGCTAGAGCTTCTTCTACAGTATGGAGCAAACATAAATGCTTGTGATTCAAGAGGTCAGATGCCACTCCATCGATGTATTCTGAGAGGCAAAGCTACATTCGCCAAACTGCTTCTCACAAGGGGAGCAGACCCGCGAGCTGTAAACGGGGAAGGCAAAACCCCATTTGAGCTAGCAGTAGAGTCAAACTTTGTTGATAGTGATGTCCTTGCTCTATTATCAGACTCGAATGGATAA 2499 42.82 MHFAKLDDSPMFRKQIQCLEESAESLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLIQFVNIDLHDVKEARKRFDKASLLYDQAREKYLSLRKGTKSDIATVLEEELHNARSTFEQARFNLVTTLSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSKYEQAALNEKMQEFKRQIDRESRWPSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQNSKPSGSGSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPISPMGSSHHRSASESSSYESTDFDHTAVEEYTSERSSATAHHERPSKGLQQIRSCIKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVLTLFQSLGNTFANSVWEELLQSRNAFQVDLVPTGLYKSDKPQLHFISKPSHADSISIKEKYIHAKYAEKLFVRKPKDNQYPCLVTQQIWDAVRTNDKKAVYRYIVNSEADVNVVYEQTLCNSSLTLAKVMLLQEQTNLDHSSRCLTGDSFDKSSVSSSNAASTSEGQTMEDFDGWSLLHLACETADIGMLELLLQYGANINACDSRGQMPLHRCILRGKATFAKLLLTRGADPRAVNGEGKTPFELAVESNFVDSDVLALLSDSNG* 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22419937 22442311 - Vvi1g1342 Vvi1g1342 770542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1342 832 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Vvi1g1342 832 CDD ArfGap 503 632 - -
Vvi1g1342 832 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vvi1g1342 832 Gene3D Arf GTPase activating protein 480 645 IPR038508 -
Vvi1g1342 832 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Vvi1g1342 832 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vvi1g1342 832 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vvi1g1342 832 SMART PH_update 293 430 IPR001849 -
Vvi1g1342 832 Pfam Ankyrin repeats (many copies) 741 793 IPR002110 GO:0005515
Vvi1g1342 832 CDD PH_ACAP 295 432 - -
Vvi1g1342 832 Pfam PH domain 294 427 IPR001849 -
Vvi1g1342 832 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Vvi1g1342 832 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Vvi1g1342 832 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Vvi1g1342 832 MobiDBLite consensus disorder prediction 447 463 - -
Vvi1g1342 832 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Vvi1g1342 832 Pfam BAR domain of APPL family 6 232 - -
Vvi1g1342 832 SUPERFAMILY PH domain-like 204 427 - -
Vvi1g1342 832 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Vvi1g1342 832 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Vvi1g1342 832 MobiDBLite consensus disorder prediction 253 269 - -
Vvi1g1342 832 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 830 - -
Vvi1g1342 832 PANTHER CENTAURIN/ARF 1 830 IPR045258 GO:0005096
Vvi1g1342 832 MobiDBLite consensus disorder prediction 328 348 - -
Vvi1g1342 832 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vvi1g1342 832 MobiDBLite consensus disorder prediction 441 464 - -
Vvi1g1342 832 SMART ANK_2a 739 768 IPR002110 GO:0005515
Vvi1g1342 832 SMART ANK_2a 772 801 IPR002110 GO:0005515
Vvi1g1342 832 Coils Coil 118 138 - -
Vvi1g1342 832 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Vvi1g1342 832 Gene3D - 646 828 IPR036770 -
Vvi1g1342 832 Coils Coil 227 247 - -
Vvi1g1342 832 SUPERFAMILY Ankyrin repeat 657 820 IPR036770 -
Vvi1g1342 832 ProSiteProfiles Ankyrin repeat region circular profile. 772 803 - -
Vvi1g1342 832 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Vvi1g1342 832 MobiDBLite consensus disorder prediction 248 269 - -
Vvi1g1342 832 CDD BAR_SFC_plant 14 215 IPR035670 -
Vvi1g1342 832 MobiDBLite consensus disorder prediction 329 348 - -
Vvi1g1342 832 Gene3D - 285 439 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1342 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - vvi:100259206 1600.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1342 Vvi17g26 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42