Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1348 ATGACAGACTTACATGGTTGGTCTCGGTCCTCATACTTTTCTGAGGAAGCATGCTTGCCTAGTGAGAGACAAGTTGGGTTTTGGAAGGCAGAAACCATGGCTGACCGCAATGCAGGTGGCAAATCAATTGCTTCTTCACCCATGGAGAAACTTATACCAACAGAATCTCAGACGGTGAATTGCTGGGAGCAATCAGAGCCCTACCTAATCCGGGACCAGAAAGTGAATCTTAGCTCCGAAAGGCATGCAGTGGGAGCAGAGAGAGTAGTCAGAAATTCCTTGGATATGTGGAGAACTGTGGAACATGATCTAGGGACAAGATCTAATGCAAATGTACATTCAGCATCCTATTTTATGGAAGGTGACAAAATTAATATGACTGGTTCTCAGTATGAGAATGGTCTGTTCTCAAGCTCACTGTCAGAATTATTTAATAGAAAGTTGAGATTATCATCAAACAATGGACTATATGGCCATTCTGTTGATACTGTTGCCCCTCATCATGAGGAAGAGGACCTTTTTGAATCTCTTGAGGAAATTGAGGCCCAAACCATTGGAAACCTCCTCCCTAATGAGGATGACTTGCTTTCCGGAGTGGCTGATGTGCTTGACTATGTTGTCCAACCCAGTAATGGAGATGATTTAGAAGATATAGACCTTTTTAGCAGTGTTGGAGGGATGGATTTAGGGGATGATGGGTCCTCTGCAGGACAAAGAAATTCTGAATATCCTGGAGGAATGTCTAATGGTCAGCTAGGAGGATCTAATGGTTCAGCAGTTGGGGAACACCCTTATGGTGAACATCCTTCTAGGACACTGTTTGTGAGAAATATAAATAGCAATGTTGAAGATTCTGAGTTACGGATCCTTTTTGAGCAATATGGAGATATTCGTGCCCTTTATACGGCCTGCAAGCATCGTGGTTTTGTTATGATCTCATATTATGATATAAGAGCAGCCCGAAATGCAATGAGAGCACTCCAGAACAAACCATTGAGGCGTAGGAAGCTTGACATTCATTATTCTATTCCAAAGGACAACCCTCCAGAAAAGGATGTTAATCAGGGCACCCTTGTGGTCTTTAACCTAGATCCTTCTGTAACAAATGATGAACTACTTCAGATATTTGGTGTTTATGGAGAGATTAAAGAGATCCGTGAAACTCCACACAGAAGTCATCACAAATTTGTAGAGTTTTATGATATAAGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAATAGAAGTGATATTGCTGGGAAACGGATTAAACTTGAACCAAGCCGTCCTGGTGGTGCAAGACGTTTGATGCAACAATTTCCTTCTGAGCTGGAGGAAGATGAATCAGGTCTTTATCTGCAACAGAATAACACTCCTAACAATTCAACAACAGGATTCCCTGGACCAGCTTCACTTGGAGCAATTACCTCTAGCAGCATGGAGAATGGAACAATTATGGGAGTACACTCTGGAATCCCATTTCCTATTAGACCCTTCCTGGAAAATGTGTCTCATCATGGGATCTCTTCTAGTGTTCCGAACACCTTACCCTCTCTCTTGTCTGTCGAATCAGTTGGCAGTCAATCTGGTCTTGCTGAGTCCAGCCGCTCACAGGGCCAATTGAAATTTGATTTTCGAGGCACACAAAGTTTGCACCCTCATTCACTCCCAGAGTATAATGATGGTTTAGCTAATGGTGCTCCCTGCAATCCTGTGGGCACCATGGCTGCCAACATCAATCCCAGGCCAGAAAGAATTGAGAATAGGCAGTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATATGTGGAGTAATTCGCATCACCCTCAGTCTCCAGGCATGATGTGGCCGAACTCACCATCCTTTATGAATGGGATTGGCACTGCTCATCCTCCACCTAGATTGCATGGACTTCCTAGGGCACCATCTCATATGCTGAATACTATGCTATCTATTAATAACCACCATGTGGGATCAGCACCAACTGTTAATCCTTCTATCTGGGACAGGCGGCATACCTATGCTGGGGAATCCTCTGAGGCTTCTGGGTTTCATCCAGGTTCTCTTGGGAGTATGAGAATTTCCAATAACTCACTGCATCCTTTGGAATTTGCTCCTCATAATATCTTCCCTTCTGTTGGTGGGAACTGCATAGATCTTTCCATTCCCCCTAAAAATGTTGGACTGCACTCCCATCATCAGAGGTGCCTGATGTTTCCTGGCAGAAGCCAACTGATTCCTATGATGAGTTCCTTTGACCCTCCTAATGAGCGTTCTAGAAGCCGTAGAAATGACAACAGTTCCAATCAGGTTGACAACAAGAAACAATATGAACTTGATATTGACCGCATACTGCGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAGATTATTCCATTCTATCAGGCATTCAATGGAAAGAAATGGGAGAAGTTCAATAGCGAAAAGGTGGCATCACTTGCATATGCCCGCATACAGGGAAAGGCTGCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAGGATAAGCGATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAACCAGCTCCAATGAGGACAACCACCAAGGAAGTCCACCAAATTTGACAACTGGGGAGGACTATTCGAATGGAGACTCATCTTCAGGTTCAACAAAGGATTCAGACTGA 2961 43.97 MTDLHGWSRSSYFSEEACLPSERQVGFWKAETMADRNAGGKSIASSPMEKLIPTESQTVNCWEQSEPYLIRDQKVNLSSERHAVGAERVVRNSLDMWRTVEHDLGTRSNANVHSASYFMEGDKINMTGSQYENGLFSSSLSELFNRKLRLSSNNGLYGHSVDTVAPHHEEEDLFESLEEIEAQTIGNLLPNEDDLLSGVADVLDYVVQPSNGDDLEDIDLFSSVGGMDLGDDGSSAGQRNSEYPGGMSNGQLGGSNGSAVGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRALYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNPPEKDVNQGTLVVFNLDPSVTNDELLQIFGVYGEIKEIRETPHRSHHKFVEFYDIRAAEAALRALNRSDIAGKRIKLEPSRPGGARRLMQQFPSELEEDESGLYLQQNNTPNNSTTGFPGPASLGAITSSSMENGTIMGVHSGIPFPIRPFLENVSHHGISSSVPNTLPSLLSVESVGSQSGLAESSRSQGQLKFDFRGTQSLHPHSLPEYNDGLANGAPCNPVGTMAANINPRPERIENRQLSGANSNGLTVELNDGVFGSSGNGSCPLPGHHYMWSNSHHPQSPGMMWPNSPSFMNGIGTAHPPPRLHGLPRAPSHMLNTMLSINNHHVGSAPTVNPSIWDRRHTYAGESSEASGFHPGSLGSMRISNNSLHPLEFAPHNIFPSVGGNCIDLSIPPKNVGLHSHHQRCLMFPGRSQLIPMMSSFDPPNERSRSRRNDNSSNQVDNKKQYELDIDRILRGEDTRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPCQIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQVPFPMGVNVRSRPGKTRTSSNEDNHQGSPPNLTTGEDYSNGDSSSGSTKDSD* 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22510169 22524870 + Vvi1g1348 Vvi1g1348 770548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1348 986 CDD RRM1_MEI2_like 270 346 IPR034453 -
Vvi1g1348 986 Pfam RNA recognition motif 2 812 908 IPR007201 -
Vvi1g1348 986 MobiDBLite consensus disorder prediction 924 986 - -
Vvi1g1348 986 SUPERFAMILY RNA-binding domain, RBD 814 899 IPR035979 GO:0003676
Vvi1g1348 986 CDD RRM3_MEI2_like 815 900 IPR034454 -
Vvi1g1348 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Vvi1g1348 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Vvi1g1348 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Vvi1g1348 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Vvi1g1348 986 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 983 - -
Vvi1g1348 986 MobiDBLite consensus disorder prediction 777 794 - -
Vvi1g1348 986 SUPERFAMILY RNA-binding domain, RBD 268 431 IPR035979 GO:0003676
Vvi1g1348 986 MobiDBLite consensus disorder prediction 946 986 - -
Vvi1g1348 986 PANTHER PROTEIN MEI2-LIKE 4 9 983 - -
Vvi1g1348 986 MobiDBLite consensus disorder prediction 231 259 - -
Vvi1g1348 986 SMART rrm1_1 272 340 IPR000504 GO:0003723
Vvi1g1348 986 SMART rrm1_1 357 425 IPR000504 GO:0003723
Vvi1g1348 986 SMART rrm1_1 814 890 IPR000504 GO:0003723
Vvi1g1348 986 MobiDBLite consensus disorder prediction 769 794 - -
Vvi1g1348 986 Gene3D - 261 354 IPR012677 -
Vvi1g1348 986 Gene3D - 355 448 IPR012677 -
Vvi1g1348 986 MobiDBLite consensus disorder prediction 234 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1348 - - - vvi:100260954 1944.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1348 Vvi17g20 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46