Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1349 ATGGAGAATGAAGAGGGGCTTCAAGCAGATGGTGAATCAGATCCTAAAGCACCCATTCCAGTATCTGAAGTTGATGCTTGGGAAAACATCAGGGATGATGATATCATGCAACAACAGTCTGCGATTCGGGCCGAGGAAGCTGAGAAAGTTCCCTTCATCGGTGACAAGGAACCTCTTTCTGTATTAGCAGCTGAATATGAGTCAGGCAGCCCCATCTTGCTGAAGAAAATAAAGGTGCTTGGTGAAAAATATGGCTCTATCAGGCGAACTAGGGGAGATGGGAACTGCTTTTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTCTGGAGTCACAAGACCAAGCAGAAGTTGATCGCGTCACAACTAATGTTGAAAAATGCAGAGAGACACTTCAAGCTCTAGGTTATGCAGACTTTACTTTTGAGGACTTTTTTGCGTTATTCCTTGAGCAGCTGGAAAGTGTTGTCCAAGGAAAGGAGACTTCCATAAGTCATGATGAGCTTGTAATAAGGAGTCGAGATCAGTCCATATCCGACTATATTGTAATGTTCTTCAGATTTGTAACCTCTGGTGAAATAAAACGACGCTCAGAGTTTTTTGAACCCTTCATATTGGGAATGACAAATGCTACAGCTACAGTGGAGCAGTTTTGCAAGTCATCAGTGGAACCAATGGGCGAAGAGAGCGACCATGTGCACATTATTGCATTGTCTGATGCACTGGGTGTGCCAATCCGTGTTGTGTACCTGGACCGGAGCACTTATGATATTGATCATGTCATCGTAAATCATCATGATTTCATTCCCTCTGCTGGTGATCTTCCCAGTGCAGGTGGTGGGAGCTCTGAAACCACCAAGCCCATTGTGACTTTGCTATACCGACCAGGCCACTATGATATTCTTTACCTTAAGTGA 918 44.01 MENEEGLQADGESDPKAPIPVSEVDAWENIRDDDIMQQQSAIRAEEAEKVPFIGDKEPLSVLAAEYESGSPILLKKIKVLGEKYGSIRRTRGDGNCFFRGFMFSYLEHILESQDQAEVDRVTTNVEKCRETLQALGYADFTFEDFFALFLEQLESVVQGKETSISHDELVIRSRDQSISDYIVMFFRFVTSGEIKRRSEFFEPFILGMTNATATVEQFCKSSVEPMGEESDHVHIIALSDALGVPIRVVYLDRSTYDIDHVIVNHHDFIPSAGDLPSAGGGSSETTKPIVTLLYRPGHYDILYLK* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22527462 22544554 - Vvi1g1349 Vvi1g1349 770549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1349 305 Pfam Peptidase C65 Otubain 46 303 IPR019400 -
Vvi1g1349 305 MobiDBLite consensus disorder prediction 1 30 - -
Vvi1g1349 305 SUPERFAMILY Cysteine proteinases 52 303 IPR038765 -
Vvi1g1349 305 PIRSF OTUB 21 305 IPR016615 GO:0016579|GO:0016787
Vvi1g1349 305 Gene3D Peptidase C65 Otubain, subdomain 1 51 303 IPR042468 -
Vvi1g1349 305 PANTHER UBIQUITIN THIOLESTERASE PROTEIN OTUB 46 305 IPR019400 -
Vvi1g1349 305 ProSiteProfiles OTU domain profile. 85 272 IPR003323 -
Vvi1g1349 305 PANTHER UBIQUITIN THIOESTERASE 46 305 - -
Vvi1g1349 305 Gene3D Peptidase C65 Otubain, subdomain 2 91 244 IPR042467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1349 K09602 OTUB1; ubiquitin thioesterase protein OTUB1 [EC:3.4.19.12] - vvi:100262625 608.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00225 . . . . . . . . . . . . . . . . . . Cpe03g01177 . . . . . . . . . . . . . . . . Chy07g01545 Cme07g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005203 3 3 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 40