Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1350 ATGGATTATGACACGTCTTGGAAATCATCTACTGACACATTTTATCATTTCTTTTCCAAAGGCGGCGTCGATCGATTTCCGAGCTCAAGTTGGTCCATGGCTAAGAGTAAAGGAAAGAAGTCTAGAAATAATGGGCCTCATGTGAACCCCCCAAATGCGAGTAAGAAGATAGAGAAGAAATCTTCAAAGAAAAAGAAGAAAGTGAAGAAAATCAACGAGGCTTCTGCCCTTGATATTGGTCCTTCTTCTACTTCTACTCCTAATACGACTATCATTGCTTCCTCTAATGCCACTCCTCCTAATGCTAGCAATAAAGGGGAGAAAAAGAAGGAGAAGGGGAATGAGGAGTGGGTTTTTGGGTTTATATTCATGTGTAATGGAAAAACAAAACCTCAATGCTACCAATATCGTGTTTTTGGGCTACCAACGGGGAGAAAGGAAGAAGTAGCAAAAATCAAAGTGGGAACGAAGCTTTTCTTGTTCGACTTTGACTTGAAACTTCTCTATGGCATATATGAGGCAAGCTCTAAAGGACAAATGAATTTGGAACAAGACGCTTTCAATGGGAAATTTCCTGCACAGGTGAAGTTCAAGATTTGGAAGGAATGTTTACCACTTTCTGAGGGTGCTTTCAAAAATGCTATTCGAGATAACTATGAAGGCTCCAAGTTTAGGCCGGAGCTTACTAAAAAACAGGTGAAAGCTTTAATTTCATTGTTCCGTCCAATCAATGTGCCATTACCAACTTCTGTTGCTCCTTTGGGTTCGAATGTGGCCCCACTACATTCATTCCCAGCTCCACTTGTGGAGGAACAGTTCCGCCCATCGGCAGGACTGCCTCCTTTAGAGGACCCATATTTACCAGGCGTTCAACATACTCATGGCCCACTTGTTTTGCATCCTCGTTCTGCTCAAGTGGTTTCATCTTCGCTATACGATCATTATGGAGCAACTGCACCACCATCTTCAGTGTATGATCATTATGAAGCAGCGCCCTCTGTGGCACGTGTGCAAGCTTCAATAGAAGAACCTCGTGTTGTTCGGCAGACTACTCTTCCTCATCATACTGACCCCTATTATTGCACAGCAGCACCTCAGACATACTTGACTGAAAAACCTGTCTCATCCACACAATATCCATACAGAAGGTATGTGACTGCACCTGAGATGGTTCGTAGAGACCATCCTGTTGGTTATGAAAGGGAGTATCGTGTCTCTCACTTGCCAAGGGTGGATGAAGCCCTCCTACCAATCGAAGCTTTAGTTGATTACTACAATCAACGCCCGCTACCAGCTGCAAACACCCATCCTTCATTACGACCCCATGCTTTGGGACCACCATATGTCCCAGCACCGGCATCACATGCATTACCAGAATTGCCATCTTCGCATAGATCATATTATGCTCGAGAGGAACCAAGCCGGGTTTATGCTGTCGATCCTCTTCGAAGACCAATGCCTGGAAGGCTGAGCTTGGCTGAGCCAGTTGCACCGGTGTCTTCCTTTTATTCCTTTGCTGGGCCTCCGCCAACTTTCCGGTAA 1542 44.81 MDYDTSWKSSTDTFYHFFSKGGVDRFPSSSWSMAKSKGKKSRNNGPHVNPPNASKKIEKKSSKKKKKVKKINEASALDIGPSSTSTPNTTIIASSNATPPNASNKGEKKKEKGNEEWVFGFIFMCNGKTKPQCYQYRVFGLPTGRKEEVAKIKVGTKLFLFDFDLKLLYGIYEASSKGQMNLEQDAFNGKFPAQVKFKIWKECLPLSEGAFKNAIRDNYEGSKFRPELTKKQVKALISLFRPINVPLPTSVAPLGSNVAPLHSFPAPLVEEQFRPSAGLPPLEDPYLPGVQHTHGPLVLHPRSAQVVSSSLYDHYGATAPPSSVYDHYEAAPSVARVQASIEEPRVVRQTTLPHHTDPYYCTAAPQTYLTEKPVSSTQYPYRRYVTAPEMVRRDHPVGYEREYRVSHLPRVDEALLPIEALVDYYNQRPLPAANTHPSLRPHALGPPYVPAPASHALPELPSSHRSYYAREEPSRVYAVDPLRRPMPGRLSLAEPVAPVSSFYSFAGPPPTFR* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22547028 22561957 + Vvi1g1350 Vvi1g1350 770550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1350 513 SMART dcd 116 242 IPR013989 -
Vvi1g1350 513 MobiDBLite consensus disorder prediction 25 50 - -
Vvi1g1350 513 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 32 508 - -
Vvi1g1350 513 MobiDBLite consensus disorder prediction 77 103 - -
Vvi1g1350 513 Pfam Development and cell death domain 120 240 IPR013989 -
Vvi1g1350 513 ProSiteProfiles DCD domain profile. 116 242 IPR013989 -
Vvi1g1350 513 MobiDBLite consensus disorder prediction 19 110 - -
Vvi1g1350 513 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN-RELATED 32 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1350 - - - vvi:100255660 928.317
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1350 Vvi14g1090 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009208 1 2 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 33