Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1351 ATGTCGGCCATGGTTTCGGCTCTTTCTCAAGTGATAGGCACCAGGGACAACAACCCTAGTGCTACTCGTATGGTGCAGTCGGCTGATTCATCTTCAGCTCTCTCTGAATCATCTCAATTACCACCCCAAGATCAAGGAAATGTGAGGAGAAGGCACTATAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCCGCCGAAATACGAGACCCGAAGAAGGCGGCGAGAGTCTGGCTAGGCACATTCGACACGGCCGAGGATGCGGCCCTCGCCTATGATCAAGCAGCCCTCAGGTTCAAAGGCACCAAGGCTAAGCTCAACTTTCCCGAGCGCGTCCAACAACAAACAAGTCAGATTGGGTATTTCATGGACCACGCAGGCATGTTCGACGACCAAAGCCATCGTCCTCCGGCCATGCCGGCGCCTCCTCCGCCTCTTCCTCCTCCGTCGCTGCCACACGAATTTCTTCAGTATGGTCAGCTCCTCTCTAGTAGCAGTGACGCCGATTTCGCTTATTTCAGTTCGAATCTTTACAACCAACCCCAACAGCAACCGCCTTATTTCCCGCAACCGTCGTCCACCACCACCACCACCACTTCTTCGTCTTCTACTACCACCTCGGATCAGTACTACTCTTCACAGAGCTCGTCCAGCTTCTATTATCCTCACTATGGGGAAGACTTCAATACTAGTTACCACCCACCAAGTGAGTAG 714 53.08 MSAMVSALSQVIGTRDNNPSATRMVQSADSSSALSESSQLPPQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDQAALRFKGTKAKLNFPERVQQQTSQIGYFMDHAGMFDDQSHRPPAMPAPPPPLPPPSLPHEFLQYGQLLSSSSDADFAYFSSNLYNQPQQQPPYFPQPSSTTTTTTSSSSTTTSDQYYSSQSSSSFYYPHYGEDFNTSYHPPSE* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22567822 22570236 + Vvi1g1351 Vvi1g1351 770551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1351 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 16 218 - -
Vvi1g1351 237 MobiDBLite consensus disorder prediction 136 152 - -
Vvi1g1351 237 Gene3D AP2/ERF domain 51 111 IPR036955 GO:0003700|GO:0006355
Vvi1g1351 237 PANTHER DNA-BINDING DOMAIN 16 218 IPR044808 GO:0003700|GO:0009873
Vvi1g1351 237 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vvi1g1351 237 MobiDBLite consensus disorder prediction 14 54 - -
Vvi1g1351 237 MobiDBLite consensus disorder prediction 127 153 - -
Vvi1g1351 237 MobiDBLite consensus disorder prediction 14 45 - -
Vvi1g1351 237 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Vvi1g1351 237 MobiDBLite consensus disorder prediction 181 215 - -
Vvi1g1351 237 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Vvi1g1351 237 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vvi1g1351 237 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Vvi1g1351 237 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vvi1g1351 237 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1351 Vvi14g1088 ECH
Vvi1g1351 Vvi17g17 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14486 PF00847 AP2 3.30E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1351 - - vvi:100250476 346.665