Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1352 ATGGCTCTAAGGCTGTTGTCTGCAACCTTCGTCACTGTTCCCAAACTTCAAATCTCGAAGAAGCGCGACGGCTTTACCGAAGCTAGGGTTTCGTCATCGCCGTCGATTTCTAGTATTTCGCGTAAAACCGGATCGATAAAATGTCAGGCTTTGGGAGAGAGCTCTGTTGATGGAGTCGTTAATCAAGGAATTTACGGTCCATGGACCGTCGATTCCTCCGACGTCCGAGAGGTGATTTTATACAGGTCAGGGCTAGTGACTGCTGCTGCTTCATTTGTAGTTGCTGCTTCAGCTGCTTTTTTGCCTGAGAACTCTTTACCTAGCAATGTAATCAATGAAAATCTTGATTTGCTTTATACACTTGGAGCTGGAGGATTGGGCTTATCTTTATTTTTGATTCACATCTATGTGACTGAGATTAAGCGCACTCTTCAAGCACTATGGGCACTAGGTGTTGTTGGATCTTTAGCAACATACACGAGCCTTGCACAACCAACTGGTGAGAACTTAATACAGTATGTTATTGACAACCCAACAGCTGTGTGGTTCATTGGCCCTCTTTTTGCAGCACTGACTGGACTTGTCTTCAAGGAAGGCCTTTGCTATGGAAAGCTGGAAGCTGGTATTCTCACCTTCATTATCCCCACTGTTCTTCTTGGGCACCTGACGGGCATAATGGATAATGGAGTAAAACTTACTCTTCTGGCTTCTTGGATGGCACTCTTCGTGATATTTGCAAGCAGAAAGTTCACTCAGCCTATCAAGGATGACATTGGCGACAAATCTGTATTCATGTTCAATGCCCTTGCGGAAGAGGAAAAGATGGCTTTGATTGAGAAGCTTGAGCAACAAAAATTAAAGAACCTTAAATAG 873 44.1 MALRLLSATFVTVPKLQISKKRDGFTEARVSSSPSISSISRKTGSIKCQALGESSVDGVVNQGIYGPWTVDSSDVREVILYRSGLVTAAASFVVAASAAFLPENSLPSNVINENLDLLYTLGAGGLGLSLFLIHIYVTEIKRTLQALWALGVVGSLATYTSLAQPTGENLIQYVIDNPTAVWFIGPLFAALTGLVFKEGLCYGKLEAGILTFIIPTVLLGHLTGIMDNGVKLTLLASWMALFVIFASRKFTQPIKDDIGDKSVFMFNALAEEEKMALIEKLEQQKLKNLK* 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22579760 22585456 + Vvi1g1352 Vvi1g1352 770552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1352 290 Pfam Uncharacterized integral membrane protein (DUF2301) 128 266 IPR019275 -
Vvi1g1352 290 PANTHER F3H9.20 PROTEIN 14 287 IPR019275 -
Vvi1g1352 290 Coils Coil 267 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1352 - - - vvi:100245345 505.368
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1352 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00155 Cam06g0061 Cec06g0171 Cco06g0165 Clacu06g0165 Cmu06g0161 Cre06g0937 Cone14ag0646 . . . . . Chy11g01834 Cme11g02370 . . . . . . . . Sed09g0342 . . . . . . Cpe17g00946 . Bhi12g02383 Tan06g1436 Cmetu11g1074 . Hepe03g1177 . . . . . . . . . Lsi09g01771 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011257 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29