Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1353 ATGGCGCACGGTAGCGACCTCCCGTGTGACGGCGACGGAGTCTGCATGATCTGTCGGAGGAAGCCCTCCGACGACGAGTCTATCACGTGCAAAACATGTGCCACGCCCTGGCACGTCACGTGCCTCTCGGTCCGTCCCGAAACCCTAGCGGATGCTCTCCAGTGGCAGGTTGCTGATGCTCTCCAGTGGGAGTGTCCTGACTGCTCTCCGGCGGTCGGTGAGCGGGATCCGCCGGAGGGATCCGGTGACTTGATTGCAGCGATTCGGGCGATCGAGTCGGATGGGTCGTTGACCGAGCAGGAGAAGGCGAAGAGGAGGCAGGAGCTGTTGAGCGGAACTGTGCGATCGGGGTCGCCGGAGGAGGGGAGCCCGAATAAGAGGAAGAATGGTGGGAGGGATGTTCTCGATATTCTCGACGGGAGTTTGAACTGTTCCGTTTGTATGCAGCTTCTGGAGAGACCGGTAACGACACCATGTGGTCACAACTTTTGCCTTAAATGCTTTGAGAAATGGATTGGGCAAGGAAAGCGCACATGTGCAAATTGCCGCAATGAAATCCCACGCAAGGTTGCAAGCCAACCCCGTATTAATTCTGCCCTTGTTGTTGCCATAAGAATGGCCAAGATGTCAAAATCTGTGACCTCAGTGGGCACATCAAAGGTTTACCATTTTGTCCACAACCAGAACCGACCTGACAAGGCGTACACCACTGAGCGGGCAAAGAAGGCTGGGAAGGCTAATGCTTGTAGTGGAAAGATCTTTGTCACTGTCCCTCCCGATCATTTTGGACCAATTCTTGCAGAGAATGATCCGGAAAGAAATCAAGGTGTGCTGGTTGGTGAAAGCTGGGAGGACAGGCTGGAGTGCAGGCAATGGGGAGCCCACCTTCCCCATGTTGCAGGGATTGCTGGGCAGTCAGAAGTTGGTGCCCAGTCAGTGGCACTCTCTGGAGGCTACGAAGATGATGAGGATCACGGTGAGTGGTTCCTCTATACTGGAAGTGGTGGGAGAGACCTTAGTGGGAATAAACGCACAAACAAAGAACAGTCATTTGATCAGAAGTTTGAGAAGTCAAATGAAGCACTGAAAGTAAGTTGCCTCAAGGGGTATCCTGTTCGAGTTGTGAGATCCCACAAGGAAAAGCGTTCTTCTTATGCCCCAGAAACAGGAGTGCGGTATGATGGAATCTACAGAATAGAGAAATGTTGGCGAAAAGTTGGAATACAAGGTTTTAGAGTGTGCAGATATCTTTTTGTTCGATGTGACAATGATCCTGCCCCATGGACAAGTGATGACCATGGAGACCGTCCAAGACCATTGCCTGTTATCAAGGAGTTAAAGAATGCAACCGATACAAGTGAAAGGAAAGGAACACCATCTTGGGATTATGATGAGACAGAAGGTCGATGGATGTGGAAGAAACCTCCACCAGCTAGCAGGAAACAAGGGGATGGTGGGGGAACTGTAGTCAGGAAAATTCAGCGGCATAAACAAATTTTGTCTGCCAAGGAAAGGCTTCTAAATGAATTCAGATGCCTTATGTGTCGGAATGTAATGGTTCTTCCACTCACGACCCCCTGTGCCCATAATTTTTGTAAGTCTTGCCTGGAGGGTGCCTTTTCTGGCCAAACTTTTGTGAGACAGAGGACGTGTGAAGGCAGACGGACGCTACGAGCACAAAAGAATGTCATGAAATGCCCTTCTTGCCCCAATGACATCTCTGACTTCCTTCAAAATCCACAGGTTAATAGAGAGTTGATGGATGTGATAGTATCACTCCAGCGCAGGACTGTGGAGTCGGGGGAAGATGCTGAGGAGACGAGTGAAGGAACCGATGGCATGGATGAAAAGCCTGATGCCATTACTGGTGATAAAGAAATTGGCGAGAGTTGTGAAATTCAGGAGGATTCTGAAGAGACTGATGGCATGAACGAGAAGCAGGATTCTGAAGAGACTGATGGCATGGATGAGAAGCCTGATGCTGTTGCTGCAGATAAGGAAACTGGTGATGAAAGTTGTGAAATTCAGGATGCTTACCAAAAGGATGTATCTGATCCTTTGGTTGAAACCAAACCCGAGAAGGGTAACAAGCAAAAGAAAGTATTACCCAGGAAGTCAGATAGTGTGAATGGTAATGCTGAAGTGAAGTCTGATACTTTGAATGCCGATGCTGAAGTTAATGCTGTCAAAGGGGGGGCTCCTGAAAATAATGAGCTACAAACAAGTCCAGTTGACAGCACACCAAAGCGAAATTACAAGAGAAGGAAGCCTAATGGAGTGAGCAACAGCCCCGCATCAACGCTGGGTTATGGGGTGAAGACTAGAAGCATGAAGGCCAAAATGGCAGCTGCTGCTCCAAATGATTTGCCATCAATTACAATCCAAGTTCAGAGTGATGATGATTTTGAATGA 2412 49.09 MAHGSDLPCDGDGVCMICRRKPSDDESITCKTCATPWHVTCLSVRPETLADALQWQVADALQWECPDCSPAVGERDPPEGSGDLIAAIRAIESDGSLTEQEKAKRRQELLSGTVRSGSPEEGSPNKRKNGGRDVLDILDGSLNCSVCMQLLERPVTTPCGHNFCLKCFEKWIGQGKRTCANCRNEIPRKVASQPRINSALVVAIRMAKMSKSVTSVGTSKVYHFVHNQNRPDKAYTTERAKKAGKANACSGKIFVTVPPDHFGPILAENDPERNQGVLVGESWEDRLECRQWGAHLPHVAGIAGQSEVGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNEALKVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWRKVGIQGFRVCRYLFVRCDNDPAPWTSDDHGDRPRPLPVIKELKNATDTSERKGTPSWDYDETEGRWMWKKPPPASRKQGDGGGTVVRKIQRHKQILSAKERLLNEFRCLMCRNVMVLPLTTPCAHNFCKSCLEGAFSGQTFVRQRTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIVSLQRRTVESGEDAEETSEGTDGMDEKPDAITGDKEIGESCEIQEDSEETDGMNEKQDSEETDGMDEKPDAVAADKETGDESCEIQDAYQKDVSDPLVETKPEKGNKQKKVLPRKSDSVNGNAEVKSDTLNADAEVNAVKGGAPENNELQTSPVDSTPKRNYKRRKPNGVSNSPASTLGYGVKTRSMKAKMAAAAPNDLPSITIQVQSDDDFE* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22586177 22593857 - Vvi1g1353 Vvi1g1353 770553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1353 803 SUPERFAMILY RING/U-box 504 593 - -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 647 704 - -
Vvi1g1353 803 SMART ring_2 512 569 IPR001841 -
Vvi1g1353 803 SMART ring_2 15 68 IPR001841 -
Vvi1g1353 803 SMART ring_2 144 182 IPR001841 -
Vvi1g1353 803 SUPERFAMILY PUA domain-like 246 441 IPR015947 -
Vvi1g1353 803 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 781 803 - -
Vvi1g1353 803 SUPERFAMILY RING/U-box 136 189 - -
Vvi1g1353 803 ProSiteProfiles Zinc finger RING-type profile. 512 569 IPR001841 -
Vvi1g1353 803 SMART PHD_3 14 69 IPR001965 -
Vvi1g1353 803 CDD RING-HC 144 182 - -
Vvi1g1353 803 SMART G9a_1 267 424 IPR003105 -
Vvi1g1353 803 Pfam Zinc finger, C3HC4 type (RING finger) 143 182 - -
Vvi1g1353 803 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 715 - -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 611 630 - -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 597 769 - -
Vvi1g1353 803 ProSiteProfiles Zinc finger RING-type profile. 144 183 IPR001841 -
Vvi1g1353 803 ProSitePatterns Zinc finger PHD-type signature. 15 68 IPR019786 -
Vvi1g1353 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 618 IPR013083 -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 96 132 - -
Vvi1g1353 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 211 IPR013083 -
Vvi1g1353 803 ProSiteProfiles Zinc finger PHD-type profile. 12 71 IPR019787 -
Vvi1g1353 803 SUPERFAMILY FYVE/PHD zinc finger 4 72 IPR011011 -
Vvi1g1353 803 MobiDBLite consensus disorder prediction 631 646 - -
Vvi1g1353 803 Gene3D - 243 441 IPR036987 -
Vvi1g1353 803 ProSiteProfiles YDG domain profile. 272 420 IPR003105 -
Vvi1g1353 803 Pfam RING-type zinc-finger 512 567 IPR027370 -
Vvi1g1353 803 Pfam SAD/SRA domain 275 423 IPR003105 -
Vvi1g1353 803 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 715 IPR045134 -
Vvi1g1353 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 82 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1353 Vvi17g14 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1353 K10638 - vvi:100267660 1646.33