Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g1353 | ATGGCGCACGGTAGCGACCTCCCGTGTGACGGCGACGGAGTCTGCATGATCTGTCGGAGGAAGCCCTCCGACGACGAGTCTATCACGTGCAAAACATGTGCCACGCCCTGGCACGTCACGTGCCTCTCGGTCCGTCCCGAAACCCTAGCGGATGCTCTCCAGTGGCAGGTTGCTGATGCTCTCCAGTGGGAGTGTCCTGACTGCTCTCCGGCGGTCGGTGAGCGGGATCCGCCGGAGGGATCCGGTGACTTGATTGCAGCGATTCGGGCGATCGAGTCGGATGGGTCGTTGACCGAGCAGGAGAAGGCGAAGAGGAGGCAGGAGCTGTTGAGCGGAACTGTGCGATCGGGGTCGCCGGAGGAGGGGAGCCCGAATAAGAGGAAGAATGGTGGGAGGGATGTTCTCGATATTCTCGACGGGAGTTTGAACTGTTCCGTTTGTATGCAGCTTCTGGAGAGACCGGTAACGACACCATGTGGTCACAACTTTTGCCTTAAATGCTTTGAGAAATGGATTGGGCAAGGAAAGCGCACATGTGCAAATTGCCGCAATGAAATCCCACGCAAGGTTGCAAGCCAACCCCGTATTAATTCTGCCCTTGTTGTTGCCATAAGAATGGCCAAGATGTCAAAATCTGTGACCTCAGTGGGCACATCAAAGGTTTACCATTTTGTCCACAACCAGAACCGACCTGACAAGGCGTACACCACTGAGCGGGCAAAGAAGGCTGGGAAGGCTAATGCTTGTAGTGGAAAGATCTTTGTCACTGTCCCTCCCGATCATTTTGGACCAATTCTTGCAGAGAATGATCCGGAAAGAAATCAAGGTGTGCTGGTTGGTGAAAGCTGGGAGGACAGGCTGGAGTGCAGGCAATGGGGAGCCCACCTTCCCCATGTTGCAGGGATTGCTGGGCAGTCAGAAGTTGGTGCCCAGTCAGTGGCACTCTCTGGAGGCTACGAAGATGATGAGGATCACGGTGAGTGGTTCCTCTATACTGGAAGTGGTGGGAGAGACCTTAGTGGGAATAAACGCACAAACAAAGAACAGTCATTTGATCAGAAGTTTGAGAAGTCAAATGAAGCACTGAAAGTAAGTTGCCTCAAGGGGTATCCTGTTCGAGTTGTGAGATCCCACAAGGAAAAGCGTTCTTCTTATGCCCCAGAAACAGGAGTGCGGTATGATGGAATCTACAGAATAGAGAAATGTTGGCGAAAAGTTGGAATACAAGGTTTTAGAGTGTGCAGATATCTTTTTGTTCGATGTGACAATGATCCTGCCCCATGGACAAGTGATGACCATGGAGACCGTCCAAGACCATTGCCTGTTATCAAGGAGTTAAAGAATGCAACCGATACAAGTGAAAGGAAAGGAACACCATCTTGGGATTATGATGAGACAGAAGGTCGATGGATGTGGAAGAAACCTCCACCAGCTAGCAGGAAACAAGGGGATGGTGGGGGAACTGTAGTCAGGAAAATTCAGCGGCATAAACAAATTTTGTCTGCCAAGGAAAGGCTTCTAAATGAATTCAGATGCCTTATGTGTCGGAATGTAATGGTTCTTCCACTCACGACCCCCTGTGCCCATAATTTTTGTAAGTCTTGCCTGGAGGGTGCCTTTTCTGGCCAAACTTTTGTGAGACAGAGGACGTGTGAAGGCAGACGGACGCTACGAGCACAAAAGAATGTCATGAAATGCCCTTCTTGCCCCAATGACATCTCTGACTTCCTTCAAAATCCACAGGTTAATAGAGAGTTGATGGATGTGATAGTATCACTCCAGCGCAGGACTGTGGAGTCGGGGGAAGATGCTGAGGAGACGAGTGAAGGAACCGATGGCATGGATGAAAAGCCTGATGCCATTACTGGTGATAAAGAAATTGGCGAGAGTTGTGAAATTCAGGAGGATTCTGAAGAGACTGATGGCATGAACGAGAAGCAGGATTCTGAAGAGACTGATGGCATGGATGAGAAGCCTGATGCTGTTGCTGCAGATAAGGAAACTGGTGATGAAAGTTGTGAAATTCAGGATGCTTACCAAAAGGATGTATCTGATCCTTTGGTTGAAACCAAACCCGAGAAGGGTAACAAGCAAAAGAAAGTATTACCCAGGAAGTCAGATAGTGTGAATGGTAATGCTGAAGTGAAGTCTGATACTTTGAATGCCGATGCTGAAGTTAATGCTGTCAAAGGGGGGGCTCCTGAAAATAATGAGCTACAAACAAGTCCAGTTGACAGCACACCAAAGCGAAATTACAAGAGAAGGAAGCCTAATGGAGTGAGCAACAGCCCCGCATCAACGCTGGGTTATGGGGTGAAGACTAGAAGCATGAAGGCCAAAATGGCAGCTGCTGCTCCAAATGATTTGCCATCAATTACAATCCAAGTTCAGAGTGATGATGATTTTGAATGA | 2412 | 49.09 | MAHGSDLPCDGDGVCMICRRKPSDDESITCKTCATPWHVTCLSVRPETLADALQWQVADALQWECPDCSPAVGERDPPEGSGDLIAAIRAIESDGSLTEQEKAKRRQELLSGTVRSGSPEEGSPNKRKNGGRDVLDILDGSLNCSVCMQLLERPVTTPCGHNFCLKCFEKWIGQGKRTCANCRNEIPRKVASQPRINSALVVAIRMAKMSKSVTSVGTSKVYHFVHNQNRPDKAYTTERAKKAGKANACSGKIFVTVPPDHFGPILAENDPERNQGVLVGESWEDRLECRQWGAHLPHVAGIAGQSEVGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNEALKVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWRKVGIQGFRVCRYLFVRCDNDPAPWTSDDHGDRPRPLPVIKELKNATDTSERKGTPSWDYDETEGRWMWKKPPPASRKQGDGGGTVVRKIQRHKQILSAKERLLNEFRCLMCRNVMVLPLTTPCAHNFCKSCLEGAFSGQTFVRQRTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIVSLQRRTVESGEDAEETSEGTDGMDEKPDAITGDKEIGESCEIQEDSEETDGMNEKQDSEETDGMDEKPDAVAADKETGDESCEIQDAYQKDVSDPLVETKPEKGNKQKKVLPRKSDSVNGNAEVKSDTLNADAEVNAVKGGAPENNELQTSPVDSTPKRNYKRRKPNGVSNSPASTLGYGVKTRSMKAKMAAAAPNDLPSITIQVQSDDDFE* | 804 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 22586177 | 22593857 | - | Vvi1g1353 | Vvi1g1353 | 770553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g1353 | 803 | SUPERFAMILY | RING/U-box | 504 | 593 | - | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 647 | 704 | - | - | |
Vvi1g1353 | 803 | SMART | ring_2 | 512 | 569 | IPR001841 | - | |
Vvi1g1353 | 803 | SMART | ring_2 | 15 | 68 | IPR001841 | - | |
Vvi1g1353 | 803 | SMART | ring_2 | 144 | 182 | IPR001841 | - | |
Vvi1g1353 | 803 | SUPERFAMILY | PUA domain-like | 246 | 441 | IPR015947 | - | |
Vvi1g1353 | 803 | ProSitePatterns | Zinc finger RING-type signature. | 527 | 536 | IPR017907 | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 781 | 803 | - | - | |
Vvi1g1353 | 803 | SUPERFAMILY | RING/U-box | 136 | 189 | - | - | |
Vvi1g1353 | 803 | ProSiteProfiles | Zinc finger RING-type profile. | 512 | 569 | IPR001841 | - | |
Vvi1g1353 | 803 | SMART | PHD_3 | 14 | 69 | IPR001965 | - | |
Vvi1g1353 | 803 | CDD | RING-HC | 144 | 182 | - | - | |
Vvi1g1353 | 803 | SMART | G9a_1 | 267 | 424 | IPR003105 | - | |
Vvi1g1353 | 803 | Pfam | Zinc finger, C3HC4 type (RING finger) | 143 | 182 | - | - | |
Vvi1g1353 | 803 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 1 | 715 | - | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 611 | 630 | - | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 597 | 769 | - | - | |
Vvi1g1353 | 803 | ProSiteProfiles | Zinc finger RING-type profile. | 144 | 183 | IPR001841 | - | |
Vvi1g1353 | 803 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 68 | IPR019786 | - | |
Vvi1g1353 | 803 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 498 | 618 | IPR013083 | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 96 | 132 | - | - | |
Vvi1g1353 | 803 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 211 | IPR013083 | - | |
Vvi1g1353 | 803 | ProSiteProfiles | Zinc finger PHD-type profile. | 12 | 71 | IPR019787 | - | |
Vvi1g1353 | 803 | SUPERFAMILY | FYVE/PHD zinc finger | 4 | 72 | IPR011011 | - | |
Vvi1g1353 | 803 | MobiDBLite | consensus disorder prediction | 631 | 646 | - | - | |
Vvi1g1353 | 803 | Gene3D | - | 243 | 441 | IPR036987 | - | |
Vvi1g1353 | 803 | ProSiteProfiles | YDG domain profile. | 272 | 420 | IPR003105 | - | |
Vvi1g1353 | 803 | Pfam | RING-type zinc-finger | 512 | 567 | IPR027370 | - | |
Vvi1g1353 | 803 | Pfam | SAD/SRA domain | 275 | 423 | IPR003105 | - | |
Vvi1g1353 | 803 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 1 | 715 | IPR045134 | - | |
Vvi1g1353 | 803 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 82 | IPR013083 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g1353 | K10638 | - | vvi:100267660 | 1646.33 |