Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1354 ATGAACGTCGCAGTCAACAGAGAGGCCTTCCGACAGGCCGTCGCCAACACTCTCGAGCGCCGACTCTTCTACATTCCTTCTTTCAAGATCTACCGCGGCGTCGCTGGACTTTACGACTACGGACCGCCGGGATGCGCCGTCAAGGCCAACGTCCTCGCTTTCTGGCGTCAGCATTTTGTTCTTGAGGAGAACATGTTGGAAGTTGACTGCCCTTGTGTAACGCCTGAAGTTGTTCTGAAGGCTTCAGGGCATGTTGATAAATTTACCGACCTTATGGTTAAGGATGAGAAAACTGGAACATGTTACCGAGCTGATCATTTGGTCAAGGATTTCTTGTTGGATGATCTCTCTGCTGAGGAGCTTGGTGCAAGGATCAAGGAGTATGGCATTACTGCACCTGAAACAAAGAGCCCGCTCTCCGATCCTTATCCTTTCAACTTAATGTTTCAAACATCAATAGGCCCTTCTGGCTTGATCCCTGGGTATATGCGCCCTGAAACAGCTCAAGGAATATTTGTAAATTTTAAGGACTTGTACTATTATAATGGCAGCAAGCTTCCCTTTGCTGCAGCTCAAATCGGTCAGGCTTTCAGAAATGAGATATCTCCCCGCCAAGGCCTTTTGAGAGTTCGCGAGTTCACATTGGCAGAGATTGAGTACTTTGTTGATCCTGAAGACAAATCTCACCCCAAATATTCTGAAGTTGCGGATTTGGAATTCTTGATGTTCCCGAGGGAGGAGCAGACATCTGGACAGTCAACAAGGACAATCCAACTTGGTGAAGCTGTTTCAACGGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGCACCTTGCAAAGGAAATGGCCCACTATGCTGCAGATTGTTGGGATGCTGAGATTGAGTGTTCTTATGGTTGGATTGAGTGTGTTGGTATTGCGGATAGATCTGCCTATGATTTGCGTGCTCATTCAGAAAAAAGTGGTGTTGATCTTGTGGCTCATGAAAAATTCTCAGAACCTAGAGAAGTGGAGAAATTGGTTATAGCTACAGTAAAGAAGGAACTGGGTCTTGCTTTCAGGGGTAATCAAAAGATGGTGGTTGAAGCTTTGGAGGCAATGGATGAAAAAGAAGCTTTGGAAATGAAGGCCACTTTGGAGTCCAAAGGAGAGGCAGAGTTCAATGTCTGCACACTTGGAAAAAATGTAACTATTAAGAAGAACATGGTCACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGGGTTTTCACCCCTTCAGTAATAGAGCCATCTTTTGGTATTGGGCGGATAATTTATTGTCTCTTTGAGCAGTGTTTCTACACAAGACCAAGCAAAGCTGGGGATGAACAGTTAAATGTGTTCGCTTTCCCCCCTCTTGTGGCACCTATCAAATGCTCAGTTTTCCCATTAATTCAGGACAAAAAGTACGATGCAGTTGCCAAACTCATTTCCAAGTCATTGACTGTTGCCGGTATCTCACATAAGATTGACATTTCAGGGGCCACGATTGGGAAACGATATGCAAGAACCGATGAACTTGGTATACCCTTTGCAATCACCGTTGATTCAACATCATCGGTTACAATTCGGGAGAGGGACAGCAAGGATCAAATTCGTGTTAATGTTGAAGAGGTAGTTTCAGTTGTGAAGGACGTAACTGATGGACAGAGCTCCTGGGCAGATGCGAAGGGGAGATTCCCAGCCCATTCTTCAGTGTCTGCAGATGCTTAA 1800 45.06 MNVAVNREAFRQAVANTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKANVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLVKDFLLDDLSAEELGARIKEYGITAPETKSPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGSKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEYFVDPEDKSHPKYSEVADLEFLMFPREEQTSGQSTRTIQLGEAVSTGIVNNETLAYFIGRVYLFLTRLGIDKDRLRFRQHLAKEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVDLVAHEKFSEPREVEKLVIATVKKELGLAFRGNQKMVVEALEAMDEKEALEMKATLESKGEAEFNVCTLGKNVTIKKNMVTISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEQCFYTRPSKAGDEQLNVFAFPPLVAPIKCSVFPLIQDKKYDAVAKLISKSLTVAGISHKIDISGATIGKRYARTDELGIPFAITVDSTSSVTIRERDSKDQIRVNVEEVVSVVKDVTDGQSSWADAKGRFPAHSSVSADA* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22596662 22602230 + Vvi1g1354 Vvi1g1354 770554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1354 599 Gene3D - 90 112 - -
Vvi1g1354 599 Gene3D - 113 142 - -
Vvi1g1354 599 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 125 466 IPR006195 -
Vvi1g1354 599 CDD GlyRS-like_core 14 336 IPR033731 -
Vvi1g1354 599 SUPERFAMILY Class II aaRS and biotin synthetases 12 490 IPR045864 -
Vvi1g1354 599 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 162 460 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi1g1354 599 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 112 597 - -
Vvi1g1354 599 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 4 111 - -
Vvi1g1354 599 Gene3D - 485 595 IPR036621 -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 30 44 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 143 155 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 162 179 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 194 211 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 211 221 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 441 453 - -
Vvi1g1354 599 PRINTS Glycyl-tRNA synthetase signature 526 545 - -
Vvi1g1354 599 Pfam Anticodon binding domain 487 573 IPR004154 -
Vvi1g1354 599 SUPERFAMILY Class II aaRS ABD-related 476 590 - -
Vvi1g1354 599 TIGRFAM glyS_dimeric: glycine--tRNA ligase 12 574 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vvi1g1354 599 Gene3D Bira Bifunctional Protein; Domain 2 10 459 IPR045864 -
Vvi1g1354 599 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 4 111 IPR027031 -
Vvi1g1354 599 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 112 597 IPR027031 -
Vvi1g1354 599 Gene3D - 367 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1354 K01880 GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14] - vvi:100262502 1167.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1354 Vvi17g13 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1354 . . . . Bpe13g00830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00817 . . Bma06g01327 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47