Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1355 ATGTTGAGAGTAGCAGGGAGGAGGCTCTCCTCTCTTTCACGCTGGTCGCCGTCGTCCGCTCCGGCGAGCTCAGCCCTTCTCTCCAGAATCCACTCATCCAATGGCGGTGATGGCTCCTCCAGATCCATCTCCTCTCCTCATCTCTTTAATTCCGAATTTCGAGATCTAATTAGAGGATTTTCTTCCGAGTCCCTTGCTCCAAGCCATGACTTGGGTATGATCTCAGACCTCCCACCTACTGTGGCAGCTCTGAAGAATCCCACTTCGAAAATTGTGTATGATGATCACAACCATGAGCGATTTCCCCCTGGCGACCCCAGCAAGCGTGCATTTGCCTACTTTGTATTGACTGGTGGGAGGTTTATTTATGCCTCATTGATCCGTCTCCTGGTGCTTAAGTTTGTTCTGAGCATGTCTGCTAGCAAAGATGTTCTTGCACTTGCCTCTATCGAGGTTGATCTCTCCAGCATTGAGCCTGGGAGCACTGTTACTGTCAAGTGGCGAGGGAAGCCAGTATTCATTAGGCGTCGGACTGAAGATGACATCAAGTTGGCTAATAGTGTTGATGTTGGGTCCCTTCGTGATCCACAGGAGGATGCAGTCAGGGTCAAGGACCCGGAATGGCTCATTGTTATTGGGGTCTGCACCCACTTGGGCTGCATCCCCTTGCCAAATGCTGGTGATTTTGGTGGTTGGTTTTGTCCATGCCATGGCTCCCACTACGATGTCTCTGGCAGGATCCGCAAAGGGCCAGCACCCTACAATCTTGAGGTACCCACTTACAGCTTCTTGGAGGAGAACAAGTTAATGATTGGCTGA 819 50.92 MLRVAGRRLSSLSRWSPSSAPASSALLSRIHSSNGGDGSSRSISSPHLFNSEFRDLIRGFSSESLAPSHDLGMISDLPPTVAALKNPTSKIVYDDHNHERFPPGDPSKRAFAYFVLTGGRFIYASLIRLLVLKFVLSMSASKDVLALASIEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDAVRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYSFLEENKLMIG* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22603168 22607807 + Vvi1g1355 Vvi1g1355 770555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1355 272 Pfam Ubiquinol cytochrome reductase transmembrane region 105 143 IPR004192 GO:0008121
Vvi1g1355 272 Pfam Rieske [2Fe-2S] domain 156 258 IPR017941 GO:0051537
Vvi1g1355 272 PRINTS Rieske 2Fe-2S subunit signature 232 244 IPR005805 GO:0016020|GO:0051537
Vvi1g1355 272 PRINTS Rieske 2Fe-2S subunit signature 244 256 IPR005805 GO:0016020|GO:0051537
Vvi1g1355 272 PRINTS Rieske 2Fe-2S subunit signature 210 221 IPR005805 GO:0016020|GO:0051537
Vvi1g1355 272 CDD Rieske_cytochrome_bc1 149 272 - -
Vvi1g1355 272 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1355 272 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 272 - -
Vvi1g1355 272 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 129 272 IPR006317 GO:0008121
Vvi1g1355 272 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 182 270 IPR017941 GO:0051537
Vvi1g1355 272 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 272 IPR014349 GO:0051537
Vvi1g1355 272 SUPERFAMILY ISP transmembrane anchor 89 145 - -
Vvi1g1355 272 SUPERFAMILY ISP domain 134 271 IPR036922 GO:0051537
Vvi1g1355 272 Gene3D - 141 272 IPR036922 GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1355 K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] - vvi:100257494 521.931
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1355 Vvi14g1087 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1355 . . . . Bpe13g00831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00210 . . . Bpe14g00818 . . Bma06g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002683 1 2 2 4 3 2 0 2 2 0 1 2 3 2 2 3 2 3 2 2 2 2 1 1 2 2 2 3 2 1 58