Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1358 ATGGCTTCCATTTCCAAGCTTGTAAGCCCTAGTCCTGTTTCTTCTTATTCTGTTTCTGGTTCTTTGAAGTCCAGATCTTTGCAGCCTAAGTGTTTGATCGATTTTCACAGCAGAGATGTTTTCAATGCTAGAGTTTCGTCTTCTAGGTTGTCCGTTCGGAACGACGTCGTCAGGGGATCATTGATTGTCAGATGTTCCCAACTTGAGGGAAATGGAAGCCAAATAAAGAGAACAACTCTTCATGATCTCTATGAGCAGGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGTGGTGAAGGACATCCAAGATGCGTGCAGACTTTTTGAGCCAATCTATGATGAGACGGATGGAGGAGATGGCTATGTTTCTGTTGAAGTTTCTCCAAAGCTTGCTGATGATACTGTAGGGACTGTAGAAGCTGCAAAATGGCTTTATAAAGTGGTTGATCGCCCTAATGTCTATATAAAGATCCCAGCGACAGCTCCATGCGTCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTGCCTCCTTCTTTGTCAGTCGGGTAGACACCCTCATTGACAAGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGAGGCTGCTGTGGGCTTCAACCAGTGTCAAGAATCCTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACAGTGCACTTGAGAAGTTGGGGATTGACTGGGGCTATGTCGGGTCTCAGCTGGAACTTGAAGGAGTGGAGTCTTTCAAGAAGAGCTTTGACAGCCTGCTTGATAGCCTGCAAGAGAAGGCAAACTCCCTTAAACTGGTTAGCCTGTAA 1326 46.23 MASISKLVSPSPVSSYSVSGSLKSRSLQPKCLIDFHSRDVFNARVSSSRLSVRNDVVRGSLIVRCSQLEGNGSQIKRTTLHDLYEQGGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNEQFRELVLAGKDIESAYWELVVKDIQDACRLFEPIYDETDGGDGYVSVEVSPKLADDTVGTVEAAKWLYKVVDRPNVYIKIPATAPCVPSIKEVISLGISVNVTLIFSLPRYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKLLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVSPLIGPDTVSTMPDQALQAFVDHGVVSRTIDSNVSEAEGIYSALEKLGIDWGYVGSQLELEGVESFKKSFDSLLDSLQEKANSLKLVSL* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22628855 22634048 + Vvi1g1358 Vvi1g1358 770558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1358 441 TIGRFAM tal_mycobact: transaldolase 90 427 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vvi1g1358 441 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1358 441 SUPERFAMILY Aldolase 80 432 - -
Vvi1g1358 441 CDD Transaldolase_like 90 424 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vvi1g1358 441 PANTHER TRANSALDOLASE 1 440 IPR001585 GO:0005975
Vvi1g1358 441 ProSitePatterns Transaldolase signature 1. 113 121 IPR018225 GO:0005975
Vvi1g1358 441 PIRSF Trnald_Bac_Plnt 69 441 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vvi1g1358 441 Hamap Transaldolase [tal]. 78 439 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vvi1g1358 441 Gene3D Aldolase class I 78 433 IPR013785 -
Vvi1g1358 441 PANTHER BNAA08G02750D PROTEIN 1 440 - -
Vvi1g1358 441 Pfam Transaldolase/Fructose-6-phosphate aldolase 106 428 IPR001585 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1358 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - vvi:100247241 823.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0644 Cone15ag0654 . . . . . . Blo02g00212 . . . Bpe14g00821 . . . . . . . . . . . Cpe03g01174 . . . . . . . . . . . . . . . . Chy07g01548 Cme07g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007870 1 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 36