Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1365 ATGGGTTCCTTTTGCTGCTGTCCATGTGGTGACGAATTTGAAGAATATGCTAATCCAAGTAACTCAATATATAGGCACTGCATATGTCTAAGATTCTTTTTCCAGCAGCTATTCAGTGGGTATACTGCAATTTCTCATAGACCTGATGGACGATCAGTACCATCACCAATTCAAGGAGCTACTTCTTTGGCATCATCAGGGATTGGCACAGCATTACCAGATAGTTCCTTAAGTGATACTCATCACCCTGTCTCAAGGACAGCACCTTATGACGCTGAACAAAGATACTCTCGTTTGCAGCGTGATGGTTTGGTATCCAGGCGTGATAAGTCAATGACTCACTTCCAGGACGGTTCACAGCCACTGAGAAGAAATATAAGCAGTTCTGGTATGGAGCCACTGGGCTTTGGAAAGAAAAATTATGGAGTTGAAACTGAAGAAGATGGTAAACTTGCGCAGTCCGAGGCCTCAGAGAAGACTTTGGCAACAAAAGCTGCACATGGACTAGCTTATATACAAACAACTTCTGAAGATGAAGATGTCTGCCCCACATGTCTTGATGAATATACGCCCGAAAATCCTAAAATCACAACACAGTGCTCTCACCATTTTCACCTTGGCTGTATATATGAATGGATGGAAAGAAGTGAAAGCTGTCCAATTTGTGGCAAGGAGATGGAATTCTGTGAAAGCCCATAA 699 42.78 MGSFCCCPCGDEFEEYANPSNSIYRHCICLRFFFQQLFSGYTAISHRPDGRSVPSPIQGATSLASSGIGTALPDSSLSDTHHPVSRTAPYDAEQRYSRLQRDGLVSRRDKSMTHFQDGSQPLRRNISSSGMEPLGFGKKNYGVETEEDGKLAQSEASEKTLATKAAHGLAYIQTTSEDEDVCPTCLDEYTPENPKITTQCSHHFHLGCIYEWMERSESCPICGKEMEFCESP* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22675675 22682448 - Vvi1g1365 Vvi1g1365 770565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1365 232 SUPERFAMILY RING/U-box 169 227 - -
Vvi1g1365 232 ProSiteProfiles Zinc finger RING-type profile. 182 222 IPR001841 -
Vvi1g1365 232 PANTHER OS01G0926200 PROTEIN 1 231 - -
Vvi1g1365 232 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 231 - -
Vvi1g1365 232 SMART ring_2 182 222 IPR001841 -
Vvi1g1365 232 MobiDBLite consensus disorder prediction 48 93 - -
Vvi1g1365 232 MobiDBLite consensus disorder prediction 113 141 - -
Vvi1g1365 232 MobiDBLite consensus disorder prediction 55 83 - -
Vvi1g1365 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Vvi1g1365 232 Pfam Ring finger domain 181 222 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1365 - - - vvi:100247128 492.656
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1365 . . . Bda11g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00370 Bpe14g00823 . . Bma06g01322 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018059 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5