Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1369 ATGTTGCTAAGCTGTGATCCACATGATAATGAAGCTGGCTTGATGCTTTTGGAAGACTTGACCACAAATGCAAATCAAGTACAATTGGAGGTGTTGGAGGAGATACTAACACAAAATGCAAATACAGAATATCTGAGGGGCTATCTCGATGGCCACTCTGATAAGGGACTTTTCAAGAAGAAAGTTCCTATTGTTAATTATGAAGACATCAAGCCTCATATCGAGCGAATTGCCAATGGAGAGCCATCAAGAATCATTTCAGCTCAACCCATCACTGAGCTCCTCACAAGCTCAGGAACTTCAGGGGGGCAGCCAAAGTTGATGCCTTCAACTGCTGAGGACTTGGACAGAAAGACATTCTTTTATAACCTCCTTATACCTGTGATGAACAAGTATGTTGATGGCTTGGACCAAGGAAAAGGAATGTACCTGTTGTTTATCAAGCCAGAAATCAGTACCCCTTCTGGCCTGATGGCAAGACCACGGGATGAGGTGTTAAGGGTTGGTGCAGTTTTCGCATCTGCTTTCCTGCGGGCAATCAAATTCTTAGAGGATCATTGGAGGGAATTATGCTCTAACATAAGAACAGGTTGTGTCAGTGACTGGATCACAGACCCCAGTTGCAGAAATGCCGTGTCTTCATTTCTTAGCAAACCCCAACCTGATCTAGCAGATTTCATTGATGGTGGGCTCCCTTTGGTTTCAACAATGTATGCTTCTTCTGAATGTTACTATGGGATCAATCTTAAACCATTAAGCAAGCCTTCTGATGTCTCTTACACTCTCCTCCCAAACATGGCCTACTTCGAGTTCCTCCCTGAGGGCGAAAGGGTGGAAATAGAAGTTGTCGGTCTTGTAGATGTGAAGGTCGGTCACTATTATGAACTGGTTGTGACAACTTTTACAGGCGAGTACAGAACTGGAGATATACTCATGGTGACTGGTTTCTACAACAATGCTCCTCAGTTTCGGTTTGTGCAAAGGAGGAATGTGGTTTTAAGCATTGACACTGATAAAACCAATGAAGAAGACCTCCTGAAAGCAGTGACACAAGCAAAGCTCCTGCTTGAGCCGTATGGCTTCCTTCTGACAGAATACACTAGCTATGCTGATACTTCTTCAATCCCTGGTCATTATGTACTGTTTTGGGAGCTCAAAACAAGAGGAAACAATGATTTATCCGAACCTGATCATACTATCATGGAGCAATGCTGCTCCACAGTGGAAGAATCACTGGATTCTGTTTATAGGAGGTGCAGGAGAAGGGACAATTCCATTGGACCACTGGAGATTAGGATAGTGAAGCCTGGCACATTCGACGCCCTCATGGACTTTTGTGTCTCTCAGGGTTCTTCTGTAAACCAATACAAAACACCCAGGTGCATCAAATCCAAAGAGGCCATTAAGATTTTGGACTCAAGGGTGGTGGGAAAAGTTTTCAGTAAAAAGGTTCCTTTCTGGGAGCCTTTCAAAATGGAAACAAAATGA 1488 43.68 MLLSCDPHDNEAGLMLLEDLTTNANQVQLEVLEEILTQNANTEYLRGYLDGHSDKGLFKKKVPIVNYEDIKPHIERIANGEPSRIISAQPITELLTSSGTSGGQPKLMPSTAEDLDRKTFFYNLLIPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMARPRDEVLRVGAVFASAFLRAIKFLEDHWRELCSNIRTGCVSDWITDPSCRNAVSSFLSKPQPDLADFIDGGLPLVSTMYASSECYYGINLKPLSKPSDVSYTLLPNMAYFEFLPEGERVEIEVVGLVDVKVGHYYELVVTTFTGEYRTGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPYGFLLTEYTSYADTSSIPGHYVLFWELKTRGNNDLSEPDHTIMEQCCSTVEESLDSVYRRCRRRDNSIGPLEIRIVKPGTFDALMDFCVSQGSSVNQYKTPRCIKSKEAIKILDSRVVGKVFSKKVPFWEPFKMETK* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22706569 22709016 - Vvi1g1369 Vvi1g1369 770569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1369 495 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.17 225 487 - -
Vvi1g1369 495 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.17 162 228 - -
Vvi1g1369 495 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.17 4 161 - -
Vvi1g1369 495 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 225 487 IPR004993 -
Vvi1g1369 495 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 162 228 IPR004993 -
Vvi1g1369 495 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 4 161 IPR004993 -
Vvi1g1369 495 Pfam GH3 auxin-responsive promoter 229 466 IPR004993 -
Vvi1g1369 495 Pfam GH3 auxin-responsive promoter 17 160 IPR004993 -
Vvi1g1369 495 Pfam GH3 auxin-responsive promoter 162 227 IPR004993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1369 K14487 GH3; auxin responsive GH3 gene family - vvi:100248869 937.562
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00213 . . Blo02g00215 . . . . . . . . . . . . . . . Cpe03g01170 . . . . . . . . . . . . . . . . Chy07g01556 Cme07g02003
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004277 1 1 3 1 3 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 2 2 1 1 2 2 2 43