Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1371 ATGTCGAGTGTGCAGGCTAGAATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGGGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCAGAGAGTAGGTTGCTTGTCCTCATGATTTCTTCACCAAATCGCCATGACCTTGTGTTTCCTAAGGGTGGATGGGAGAATGATGAGACTGTTGAACAAGCTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACTGCAGCCTGGAAGGAGGTTGCAGAGGTTACATGTTTGCACTGCAGGTGACTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGGCTCTTAAAAATTTTTTGACCTCTCTCCCAGAGGACAAAAAGAACGAAATGAGGGAAGAGTTGGTGGAGTTTTCTATGATGCCAGTTCCAGATGCTGCAAAAGAGCGTTCAATTTTATCCTCTGGCCGGTTTGGGAAGACCTCAGTTATGCAACGTCTTGAAGGGTCTTATAATAAAGTAACTGTGCAGGCTTGA 666 45.5 MSSVQARIGRERQRYKDHLRLVAGCIPFKFEKIVDGHTRNPESRLLVLMISSPNRHDLVFPKGGWENDETVEQAACREALEEAGVRGILGENHLGEWEFRSKSKQNNCSLEGGCRGYMFALQVTEELESWPEQALHDRKWLTPKDAFKLCRYDWMREALKNFLTSLPEDKKNEMREELVEFSMMPVPDAAKERSILSSGRFGKTSVMQRLEGSYNKVTVQA* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22724638 22728768 + Vvi1g1371 Vvi1g1371 770571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1371 221 ProSitePatterns Nudix box signature. 63 84 IPR020084 GO:0016787
Vvi1g1371 221 ProSiteProfiles Nudix hydrolase domain profile. 18 163 IPR000086 -
Vvi1g1371 221 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 1 189 - -
Vvi1g1371 221 CDD Nudix_Hydrolase_9 21 156 - -
Vvi1g1371 221 Pfam NUDIX domain 40 162 IPR000086 -
Vvi1g1371 221 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 189 - -
Vvi1g1371 221 SUPERFAMILY Nudix 12 164 IPR015797 -
Vvi1g1371 221 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 4 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1371 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - vvi:100243843 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1371 Vvi14g1072 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1371 . . . Bda11g00366 Bpe13g00839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00366 . . . Bma06g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004911 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 4 2 40