Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1372 ATGGAAGATGTTGGGACGGCAGTGCTGCAGGAACTGTGGAATAGAGTGACCCTTCAAGCTATGGTGTTTGTTGGTGAAACAAGTGACATGGTGTTTGAAAAGGGGTTCTTCCAAGAATTTTCCAAGAGCATATCTGAGCTAAGGGTCCTCTTGCAAGCCTTGAATGTTGAGAAGGTTGAAGCAGCAATGAACTACAAATCCAGGAGCAGCCTCAGTGTCTTACTTCAGTCGCGATCTGTGCTCTCACAGATGAAAGCTTTGGCTGAAGAGATTGCTAAGACAATATCTTCATGGCAACTTGTCAATCTCAATATCTCCGTCAATTTAAAATCCAAGACTGAACAAATAATTAACAGTCTGAGTTCAATGGAGTTCCATTCAGCGGTTGCAACAGAATCCCTTGCTACAGAGATAGAGAAATTGATAAATGAGAATGGCAGGAACCGACAAAATGCTATAAAGCTCCTGCAGAAGATTGGAGAAGCAGTTGGTGTGAGCTCAAATGCATCCCTGGTTCAGAATGAGCTGGCACTTTTGAAGAAGGAGAAAGAAGAGATGGAAGCTCAAAAGAAACAGGCAGAGGCATTTCAGTTATCTCAACTGATGCAGTTTTTGTATAGTACAGAAATTGTTATGAGCCCTCAAGATGAGGAAATTGCTGCATACCATCACCAATATCCAACTGAGTCTTTCAGATGCCCATTGTGCAAAGAGATGATGAGTGACCCAGTTGCAATCGTCTGTGGGCACAGCTTTGAGAGGAAGGCGATTCAGGAACATTTCTGGAGGGGAGAGAAGACCTGCCCCATATGCAGAGAAAGGCTCAGGTCCACGGAGCTTACTCCAAATCTTTCGCTTCGGAGCTCTATAGAAGAATGGAAGCAAAGAGACATGGACTTAAAATTCCAAGCTGCGCTCCCTGGAATCACCTCCAATGACCACTCTATACAGAACAGGGCCCTGAAGGAGATGCAAGTTCTGATGGAAAGGCCACGCTATACAGAAAAAGTTGCAGAGGAAGGCCTCATCTCAAAATTTGTGGAAATGCTCAAGAACAATCAGCCAAACAGAATTGCTGCACTGAAATGCCTTTTTTACTTGGCTAAATACTGTGATAATCACAAGGAGGCCATCATTGAAGCAGGAGCTGTTCGCTGCATTGTGAGGCAGTTCTATAAAGGTGAAGCAGAACCTGATGCTGTTGCAGTCTTGTTGGAGCTGTCAGCAAGAGAAGCCCTTGCAGAAAAAATAGGGAATATCAGAGACTGCATTCCTGTTTTGGTATCTTTGCTCAATTACAGTAATCCTGATGTGTCACAGAAAGCCCATAAGGTGTTGCAGAACCTCTCCTACAACACTCACTTTGTAGTCAAGATGGCTGAAGCTGGATACTTCCAACAATTTGTTGCCCGCTTCAACCAAGGACCCCATGAAACCAGAGCATCGATGGCTGCGGCCTTAATACAAATGGAACTCAAGGGGAACAGCATTAGGGAATTAGAAGACAAAACATTCATACACAACCTAGTCCAAATGCTTTCATCAAGTTCTCGAGCATGCATTTCAGCTGGCCTCAAATTAATCAAGAAGCTCGTAGCTTTCCCCAGGATGGTAAAGCGGCTTCTGGCAGATCCTGCCACAGTACCACCTTTGCTTGGCCTCATCTCAATTGTCAAGACCGACCCATGCTGGAACCAAGAAGCTGCTGCAATCCTTGCTCTACTGGTGGAAGGCAGTCAGTTCACTGAACACCAGATGTATCAGGGTTTGCAGGAATTGCAATCACAGCACAATATCAATCTCTTTTTGCAGCTCATAGCCAGTTCTGATCCCCAAACCAAGGTTCAGCTTTTGCACTTGCTGGTTGTTCTGGGCAATAAATTCGAAATGGCTAGAAACCTGATACGAACAGATAATGAAGCAATTTCCTACCTTTTTTCTTCCCTTGAAGGTGATCAGCTTGAGGTGAAACTATGGGCTATGAAACTCGTATACTGCATTTCTGAAGGTCATCCTGCTGGAGTTCCACTTCCACCATCCCCTGCAAAAGAAACAGCCATCAAAACCCTGGCAAACATCCTTTCAAATTCACCCAATATTGAAGAAAGATCCACTGCAGCTGGAATCATCAGCCAGCTTCCCAATGATGATATCATCATTGATGAGATACTATGTAAATCAGAGGTATTAAAAGCCATTCATGGAGTGATTTGCAACCTTGATGAGGAAAGCGATGGGACCAGAGCACCAGACAATTCAGACGCATCCTTACTGGAGAATGCTCTGGCAGCACTGCTACGCTACACAGAACCCACTAAGCCACAACTTTATAGGCAAGTGGGCAAGCTTGAATTGTATCCATTGCTGGTTCGCATCCTATCTAGGGGCAGCTCGCTAGCCAAGCAGCGGACAGCCACTGCACTTGCCCACCTATCCCGATCAACCAGCTTGTCAATCTCTGATTCAACTATCACGCGACAACAAGCTTTTCCACTGCTAAATGTAATGAAGTTCTTCTCCGGTATGTCCTGTTGCAGCTCAGAAATGGCAGAATGTGTAAACCTGTGTAGGGTTCATGGTGCTGCTTGTTCATCAAGGGACACATTCTGCCTTGTCAAGGTGGATGCACTGAAGCCACTAGTGCAAAATTTGAGTGAGAAAGAATCTGGTGTGGCAGAGGCTGCTTTGATGGCACTTGAAACTCTGCTAACAGACCACAGCACACTTCCCCATGCAACTGCTGCCATTGTGGATAGCCAGGGAGTGGTGGCCATTCTCCAAGTCCTGGAGAAGGGCGATTTGCCTGCCAAAATCAGAGCCCTAGACCTGTTCCAGAAGATCCTGGAGCATACAAGGATGAATGGCCCATTAGCTGAGAGGGCTGAAAGGATCCTTGTCCAGCTCCTACAAGATGATGATCTCAGGAAGAAAGTGGCTTTGGTGCTCAAGCAGATGGGCATCCTACCGGAGCAGTCTTCCTACTTTTAA 2988 45.65 MEDVGTAVLQELWNRVTLQAMVFVGETSDMVFEKGFFQEFSKSISELRVLLQALNVEKVEAAMNYKSRSSLSVLLQSRSVLSQMKALAEEIAKTISSWQLVNLNISVNLKSKTEQIINSLSSMEFHSAVATESLATEIEKLINENGRNRQNAIKLLQKIGEAVGVSSNASLVQNELALLKKEKEEMEAQKKQAEAFQLSQLMQFLYSTEIVMSPQDEEIAAYHHQYPTESFRCPLCKEMMSDPVAIVCGHSFERKAIQEHFWRGEKTCPICRERLRSTELTPNLSLRSSIEEWKQRDMDLKFQAALPGITSNDHSIQNRALKEMQVLMERPRYTEKVAEEGLISKFVEMLKNNQPNRIAALKCLFYLAKYCDNHKEAIIEAGAVRCIVRQFYKGEAEPDAVAVLLELSAREALAEKIGNIRDCIPVLVSLLNYSNPDVSQKAHKVLQNLSYNTHFVVKMAEAGYFQQFVARFNQGPHETRASMAAALIQMELKGNSIRELEDKTFIHNLVQMLSSSSRACISAGLKLIKKLVAFPRMVKRLLADPATVPPLLGLISIVKTDPCWNQEAAAILALLVEGSQFTEHQMYQGLQELQSQHNINLFLQLIASSDPQTKVQLLHLLVVLGNKFEMARNLIRTDNEAISYLFSSLEGDQLEVKLWAMKLVYCISEGHPAGVPLPPSPAKETAIKTLANILSNSPNIEERSTAAGIISQLPNDDIIIDEILCKSEVLKAIHGVICNLDEESDGTRAPDNSDASLLENALAALLRYTEPTKPQLYRQVGKLELYPLLVRILSRGSSLAKQRTATALAHLSRSTSLSISDSTITRQQAFPLLNVMKFFSGMSCCSSEMAECVNLCRVHGAACSSRDTFCLVKVDALKPLVQNLSEKESGVAEAALMALETLLTDHSTLPHATAAIVDSQGVVAILQVLEKGDLPAKIRALDLFQKILEHTRMNGPLAERAERILVQLLQDDDLRKKVALVLKQMGILPEQSSYF* 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22732852 22736901 + Vvi1g1372 Vvi1g1372 770572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1372 995 Pfam U-box domain 229 295 IPR003613 GO:0004842|GO:0016567
Vvi1g1372 995 Gene3D - 637 853 IPR011989 -
Vvi1g1372 995 ProSiteProfiles Zinc finger RING-type profile. 233 272 IPR001841 -
Vvi1g1372 995 SUPERFAMILY RING/U-box 227 296 - -
Vvi1g1372 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 292 IPR013083 -
Vvi1g1372 995 Gene3D - 854 992 IPR011989 -
Vvi1g1372 995 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 452 IPR000225 GO:0005515
Vvi1g1372 995 Gene3D - 293 630 IPR011989 -
Vvi1g1372 995 SMART Ubox_2 230 293 IPR003613 GO:0004842|GO:0016567
Vvi1g1372 995 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 995 - -
Vvi1g1372 995 CDD SP-RING_like 231 272 - -
Vvi1g1372 995 ProSiteProfiles U-box domain profile. 226 300 IPR003613 GO:0004842|GO:0016567
Vvi1g1372 995 SUPERFAMILY ARM repeat 751 979 IPR016024 -
Vvi1g1372 995 SMART arm_5 413 451 IPR000225 GO:0005515
Vvi1g1372 995 SMART arm_5 330 369 IPR000225 GO:0005515
Vvi1g1372 995 SMART arm_5 371 409 IPR000225 GO:0005515
Vvi1g1372 995 SMART arm_5 773 813 IPR000225 GO:0005515
Vvi1g1372 995 SMART arm_5 863 904 IPR000225 GO:0005515
Vvi1g1372 995 SMART arm_5 909 949 IPR000225 GO:0005515
Vvi1g1372 995 SUPERFAMILY ARM repeat 306 391 IPR016024 -
Vvi1g1372 995 SUPERFAMILY ARM repeat 407 740 IPR016024 -
Vvi1g1372 995 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 995 - -
Vvi1g1372 995 Coils Coil 169 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1372 - - - vvi:100243730 1833.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004737 1 1 1 1 2 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 1 1 1 1 1 1 4 40