Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1375 ATGGGTACTCTGAATTTGACTGTACAGGTTCTTGACATCTCTCCCAAGGTCACCCTCTCAGACTTGAATATCTTTTTCTCTTACTGTGGAACTGTTGACAACATCCAGCTCTGCAGAAAAAATGACCAGACACAGTTGGCTTTTGTGACATTCAAGCAGCCTTATGCCTTTCAAACTGCACTTCTCCTAAATGGAGCTGTTATTGGAGATAGTCCAATTCGCATACTGGCCTTACAGAATTTGGCAATTCATCCCATCCCAGACAAAAGGAATTGCAAAACCCAGAATAAGGAGAAGCAAGGAATCTTTCCAGTAGTGAACTCTGCTATACAAGGCATAGCTTCAAAAAGTATGGAGATGTTTAACAAGACTGCTGATGAGTTGGAGGAGAATTGCAAGCTTTCAGAGAAGGGCAGAGCACTAATGCACCAGACAAGATTGGCAATCTGTGCTGCTGAGAAGGGGGCAGGTCAACTTGGCACAGCTATCATGAATAACGAGTATGTTTCAAATGGCTCCATTTGGTTGTCTGGTGTGACCCCGGTTGATAGGGATGGAAATGGGAATCCTGAGTGGAACCACCAGCTGCAGTTTGATCTCAGGGACATCTCACTTGCTGATTCTGCTAATTACTACGTCAAATTCAGTCTCCGCTGCGAGGGTATCGTCTTTGGGAACAAAACTATTGGTGAAGTTTGTGTTCCATTGAAGGAACTGATCGATGAGTTCAACAGAGCTGTCAGGTTTGTAAGCTATCAGGTCAGGACTACTGATGGAAAACCCAATGGCGTACTGAATTTTTCTTATAAACTGAACATAAAAGGAAGTGATTTACCAGCAGTTGAGGCACCAGAGGATGAACATCTTCCTTACCCCTCAGTGGAAGTTGAGGAGTTTCATGCTCCTAAAAAGGATAGTTGCTACCCTTCAGTGGATGTTTCTACCTTGCCAGCAATTACTCTCCAGTATTTGCTTCATGTCAAACACTGCTCCCACAATATCAGATATCTCCTCTTGAGTTCCAGCTCTTCTTTCATATTTAGTTTCTCATTGTATTTGATATATATAGTTGTAACTTACAAGGTCGGTGGCGAACATGAAGAACGGGGCTTCAGTGGTGTTGAAACAGATCATTGCACTGCTGACTTCCATTGCGAAAACAAAATCCATGGCGGTCAAGAGCAAAACAAGTGCCTTGAAGTCTCGCATACTGATGTTCTCATTCTTGAGGACCCAAGCCGCATGTATCAGGTGGTGGAGAGAGCAGAGGATGACGATGACAACGGCATTAATAATGATGACGATGGAAAGTACCCAGATCTTACTCACTGTCTGTTTGAAGAGGAGGAGGTGGACATGAGGGGTGGATCCATTATAGATATGGTGAAGAATGGGAAGGAGGAGGGAGAGGAATTCAGATTGGAAGATGAGATTGATCATGTGGCTGACTTGTTTATAACGAGGTTCCATAAACAGATGCGCATGCAGAAGCTGGAGTCTTTCAAAAGATATCAAGAGATGCTCCAGAGAGGTGTCTAG 1539 43.73 MGTLNLTVQVLDISPKVTLSDLNIFFSYCGTVDNIQLCRKNDQTQLAFVTFKQPYAFQTALLLNGAVIGDSPIRILALQNLAIHPIPDKRNCKTQNKEKQGIFPVVNSAIQGIASKSMEMFNKTADELEENCKLSEKGRALMHQTRLAICAAEKGAGQLGTAIMNNEYVSNGSIWLSGVTPVDRDGNGNPEWNHQLQFDLRDISLADSANYYVKFSLRCEGIVFGNKTIGEVCVPLKELIDEFNRAVRFVSYQVRTTDGKPNGVLNFSYKLNIKGSDLPAVEAPEDEHLPYPSVEVEEFHAPKKDSCYPSVDVSTLPAITLQYLLHVKHCSHNIRYLLLSSSSSFIFSFSLYLIYIVVTYKVGGEHEERGFSGVETDHCTADFHCENKIHGGQEQNKCLEVSHTDVLILEDPSRMYQVVERAEDDDDNGINNDDDGKYPDLTHCLFEEEEVDMRGGSIIDMVKNGKEEGEEFRLEDEIDHVADLFITRFHKQMRMQKLESFKRYQEMLQRGV* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22748078 22755774 + Vvi1g1375 Vvi1g1375 770575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1375 512 Gene3D C2 domain 168 272 IPR035892 -
Vvi1g1375 512 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 180 - -
Vvi1g1375 512 Pfam C2 domain 186 240 IPR000008 -
Vvi1g1375 512 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 178 270 IPR035892 -
Vvi1g1375 512 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vvi1g1375 512 Pfam Cotton fibre expressed protein 475 510 IPR008480 -
Vvi1g1375 512 CDD C2_SRC2_like 180 267 IPR044750 GO:0006952
Vvi1g1375 512 PANTHER PROTEIN VIP1-LIKE 1 180 - -
Vvi1g1375 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Vvi1g1375 512 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Vvi1g1375 512 Gene3D - 4 76 IPR012677 -
Vvi1g1375 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1375 - - - vvi:104880947 358.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1375 Vvi14g1059 ECH
Vvi1g1375 Vvi14g1061 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003227 0 2 0 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 2 2 2 1 2 2 2 2 50