Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1376 ATGGCGGGAGAAGCTTCGAACTCGGATCCACATCCACGGCCTAGCGATTCCGACGCTGGTAATTCCGGAAATCCACCATCCACACCCGATTCGCCCACCTCTGCTGGTTTCAACACCGATCAACTCCCTCCCAGCCGCACTTCCGAGAACTACTCCGACGAAGATGAGGCCGCCGTCGATCCCCACATCATCAGAGACGAACCAGAAGATGTGGAGGACGAGGAGGAAGGCGAGGATCTTTACAACGACAATTTCATGGACGATTATCGGAGGATGGATGAGCACGACCAGTATGAATCGTTGGGACTTGACGAGTCTCTGGAAGATGAGAGGGATTTGGATCAGATCATGGAGGATCGAAGGGCTGCTGAGATGGAGCTCGACACTAGAGATACTCGCATAACTGAGACGAAGCTTCCTCGTCTTCTTCTCGACCAAGATACTGATGATGACAACCATAGGCCTTCAAAAAGATCAAGAGCAGATTTTAGGCCTCCAGCTGCAGCAAGAAGCTATGATGATGCTGATGCGATGTTAAGTTCACCAGGAAGGTCACGAGGACACTCACGAGAGGATGTTCCCATGACTGATCAGACTGATGATGAACCATACGAGGATGATGATGATGATGATGGTGAGTTCGAGATGTACCGTGTTCAAGGAACGCTAAGGGAATGGGTTACTAGAGATGAAGTGCGCCGCTTCATTGCAAAGAAGTTTAAGGAATTCTTACTCACCTATGTGAACCCAAAGAATGAACATGGTGATTTTGAATATGTGCGACTGATAAATGAGATGGTCTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAGTTCATCTATATCCATCCCAATATTGCTATCTGGCTGGCTGATGCCCCTCAATCTGTCCTTGAGGTCATGGAAGACGTAGCCAAGAATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAATGTGGAATGATTCTGGGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAGGTTGGGTCTTGCCCAGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGACGATATACAGGAACTATCAAAAACTCACTCTCCAGGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAAAGAAGCAGGATCTCTTTTCTGCTTACAAACTTACCCAGGAGGACAAAGAGGAAATTGAGAAGTTGGCTAAAGATCCCAGGATTGGAGAAAGGATTGTCAAGTCCATTGCACCATCAATCTATGGCCACGAGGATATAAAAACTGCAATGGCTCTTGCAATGTTTGGAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAGTATGTTGAAAAGACTGGGCAGAGAGCTGTGTATACCACTGGTAAAGGTGCTTCCGCTGTGGGTCTCACAGCATCAGTACACAAGGATCCTGTCACACGCGAATGGACACTTGAAGGAGGGGCTCTTGTTCTAGCAGATAAAGGAATCTGTCTAATTGATGAGTTTGACAAGATGAATGATCAAGACAGAGTGAGCATCCACGAAGCAATGGAACAGCAGAGTATTAGCATATCAAAGGCTGGGATTGTCACTTCTCTCCAGGCTCGCTGCTCTGTCATTGCTGCTGCAAATCCAATTGGAGGAAGATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGGACGTTGTTGACCCAGTCACAGACGAGATGCTTGCAAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCCAAGGGCACTAATGTAGAGGATAAGTCCTTGAGCAATTCCCAAGATGATATTCAACCATCTGCCAGGCCTCTTGATCCTGAGATACTCTCTCAAGATTTGCTGAAGAAATACTTGACTTACGCTAAGTTGAATGTCTTCCCAAGGTTGCATGACGCAGATCTGAACAAGCTCACACATGTTTATGCTGAGCTGCGGAGAGAATCTTCGCATGGACAAGGAGTCCCAATAGCAGTAAGGCATATAGAATCAATGATACGGATGTCTGAAGCACATGCCAGAATGCACCTCAGACAGCATGTTACCCAGGAAGATGTTGACATGGCTATTCGTGTCCTGCTTGATTCTTTCATTTCAACACAAAAATTCGGGGTGCAGAAAGCCCTACAAAAGAGCTTCAAAAAGTACATGACCTTCAAAAAGGATTACAATGAACTGCTCCTGTATCTCCTAAGAGGGCTTGTCAAGGATGCACTGCACTTTGAAGAGATTGTATCTGGGTCAAGTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAGGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAGTTCTCTAGGGCCCACTTTGAGTTGGATGCAGAGCGGGGTGTGATCAGGCATCGCCTTGCAAGATGA 2865 45.31 MAGEASNSDPHPRPSDSDAGNSGNPPSTPDSPTSAGFNTDQLPPSRTSENYSDEDEAAVDPHIIRDEPEDVEDEEEGEDLYNDNFMDDYRRMDEHDQYESLGLDESLEDERDLDQIMEDRRAAEMELDTRDTRITETKLPRLLLDQDTDDDNHRPSKRSRADFRPPAAARSYDDADAMLSSPGRSRGHSREDVPMTDQTDDEPYEDDDDDDGEFEMYRVQGTLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVAKNVVFDLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGMILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAMALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTASVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRFDVLCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGTNVEDKSLSNSQDDIQPSARPLDPEILSQDLLKKYLTYAKLNVFPRLHDADLNKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFKKYMTFKKDYNELLLYLLRGLVKDALHFEEIVSGSSSGLPHIDVKVEELQSKAQDYEIYDLKPFFSSTQFSRAHFELDAERGVIRHRLAR* 955
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 22756440 22763125 + Vvi1g1376 Vvi1g1376 770576
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1376 954 Pfam MCM P-loop domain 505 727 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 MobiDBLite consensus disorder prediction 113 169 - -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 731 751 - -
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 558 573 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 618 632 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 646 659 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 670 682 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 697 705 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 Gene3D - 365 415 - -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 49 66 - -
Vvi1g1376 954 SUPERFAMILY Nucleic acid-binding proteins 239 486 IPR012340 -
Vvi1g1376 954 SMART mcm 334 849 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 Gene3D - 497 871 IPR027417 -
Vvi1g1376 954 Pfam Mini-chromosome maintenance protein 2 54 209 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vvi1g1376 954 MobiDBLite consensus disorder prediction 10 48 - -
Vvi1g1376 954 Gene3D - 338 463 IPR012340 -
Vvi1g1376 954 ProSiteProfiles MCM family domain profile. 517 723 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 MobiDBLite consensus disorder prediction 731 755 - -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 1 212 - -
Vvi1g1376 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 851 IPR027417 -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 198 212 - -
Vvi1g1376 954 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 154 948 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi1g1376 954 Pfam MCM AAA-lid domain 764 848 IPR041562 -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 83 104 - -
Vvi1g1376 954 Pfam MCM OB domain 337 464 IPR033762 -
Vvi1g1376 954 Pfam MCM N-terminal domain 238 331 IPR027925 -
Vvi1g1376 954 PANTHER DNA HELICASE 154 948 - -
Vvi1g1376 954 ProSitePatterns MCM family signature. 626 634 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vvi1g1376 954 CDD MCM2 520 847 - -
Vvi1g1376 954 MobiDBLite consensus disorder prediction 67 82 - -
Vvi1g1376 954 Gene3D - 230 334 - -
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 347 364 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 370 382 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 405 419 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 466 477 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vvi1g1376 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 481 492 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1376 K02540 - vvi:100266163 1827.37