Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g138 ATGGGACGTGGAAAGATCGCGATCAGGAGGATTGAGAACAACACCAATAGGCAAGTCACCTTCTCAAAGCGCCGAGGAGGGCTGTTCAAGAAGGCTCATGAACTTTCTGTGCTTTGTGATGCCCAGATTGGGCTCATCATCTTCTCAAGCACCGGCAAGTTGTCCGAATACTGCAGCCTCCCTTCAAGCATGGAACAAATCATAAGAAGGTACCAAAGAGTCACTGGAACTCATATTTCCAAGCAGGATAATCGGGTAGGAGCCATCGAACAACTGCATAATGAGATAACAAGGATGAGGAATGAGACACACAACCTTCAACTAAGTCTACAGCGCTACACCGGCGATGACTTGAGCTCTATACAGTTTAAGGACTTGGAAGAACTTGAACAACAGCTTGAACACTCAATTAAGAAGGTTCGAGCCCGAAAGTACCAGCTCCTCCAACAACAGATAGACAATCTTCAGAGGAAGGCAAAAATGTTGGAAGATGAAAACGAGCAGATATGCCATTGGATCCAGGAAAAGCAGCAAGTAGCAGCAATGGAGCAGCAGCAATTGGGAATTGAGTTGAAGCCAGTGGAGGAGCAACAGGTGATGGAGCAGTTCCCATTCAGTGGAGAAGAACAACCCAACAGTGTCCTTCAGCTAGCCACCCTCTCCCCTCATTTCTACCCCTATCGCCTCCAGCCAACCCACCCCAACCTCCAGGACCTCACCCTCCAGTACCCTGGATTTGGCTCCATAGGCACTACTCCCACAAATGATTAG 771 48.38 MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSLPSSMEQIIRRYQRVTGTHISKQDNRVGAIEQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQEKQQVAAMEQQQLGIELKPVEEQQVMEQFPFSGEEQPNSVLQLATLSPHFYPYRLQPTHPNLQDLTLQYPGFGSIGTTPTND* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1353271 1355920 + Vvi1g138 Vvi1g138 769338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g138 256 Coils Coil 89 109 - -
Vvi1g138 256 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 237 - -
Vvi1g138 256 Coils Coil 123 168 - -
Vvi1g138 256 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi1g138 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g138 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Vvi1g138 256 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g138 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Vvi1g138 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g138 256 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14487 PF01486 K-box 9.70E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g138 - - vvi:100249015 499.975