Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1382 ATGGCCGTGCAGGCTCAATATCCTTCTTCCAATACTTTCTGCATTCGGAGCAATCCCTTGGAGGAGATTCAACAGTTGCAGAACATGAACGGGACTCCATTTGGCGGTTACCAGAATTACGGCATAGCCGGGCAGCATATATTGAACGGAACAGTATTCAGTGAACCAGAGAGCGATTTGACTTGCAATGCGTCCGGATCCCGCAAGAGGACTAGAGAGAATCAAATGGTTGCTACCCTCAAAACTCACCAACTCCATTACCAACACCAGCTTCTTCCAACGCCCTCTCCCCCTAACCTTCCCGCAGCCCCTACAGCAACAGCTGCCACTTCCGCATCGCCCTTGCACATGTTCCCTGAACTACCCAACAATAGATTGCATGATGATGGCGCAGGAACTTCTGCCAGCGGAACATCTTCCCTCTCCTCCATCCCCCAACAGCTCTATTCCTATCTCTGCACCCACAATCTAGACTTGGACACATTCATCCGACATCAGAACCAGAAACTCAGATTGATAGTGGAGGAGACGCGAAAGAAACATTGCAGATCCTTGCTAAGGTGA 564 50.0 MAVQAQYPSSNTFCIRSNPLEEIQQLQNMNGTPFGGYQNYGIAGQHILNGTVFSEPESDLTCNASGSRKRTRENQMVATLKTHQLHYQHQLLPTPSPPNLPAAPTATAATSASPLHMFPELPNNRLHDDGAGTSASGTSSLSSIPQQLYSYLCTHNLDLDTFIRHQNQKLRLIVEETRKKHCRSLLR* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22842548 22844572 + Vvi1g1382 Vvi1g1382 770582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1382 187 PANTHER EXPRESSED PROTEIN 1 187 - -
Vvi1g1382 187 MobiDBLite consensus disorder prediction 115 139 - -
Vvi1g1382 187 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 187 IPR017066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1382 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - vvi:100267666 329.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .