Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1384 ATGATTCCAACCAGAAGTTGCAAGAAATGTGAAAAGGTTGTGTGGACCCCGCATTTCGGCTCATTCGTTTCCCACTCGAAGGCGATTTGCCGGCCTCCGCAGTTCAGGTTTGCTTCCCTTTGCCTGCAACAACACTCAGATTTTCTCTTCCTAGTTGCCTTCCAGACATCTGATTGGATTGGGGATAAGAGGTACAAGAAGAGTGGAGCAGTGGAGGCAAAACTTAAGGTAGCAATAAATGGATTTGGAAGAATAGGAAGGAATTTCTTGAGTACGACTCCATACTTGGCATCTTTGAGGCAGAAGTTAAGCCTGTGGGGGCGGGTATTTGTAGACAGGGAGGGTGCAGGTAAGCACATTGAGGCTGGGGCCAAGAAGGTGCTCATCACTGCCCCTGGCAAGGCTGATATTCCAACCTACGTGGTTGGTGTTAATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGGAATCATAAAGGGTACAATGACCACCACTCACTCTTACACTGGCGACCAGAGACTTTTTGATGCAAGCCACCGGGTCCTCAGGCCTGTGCGTGCTGCTGTTCTCAACATAGTCCCAACTTCAACAGGTGCTGCAAAGGCTGTGGCCCTAGTCCTTCCTAATCTCAAAGGAAAGCTCAATGGCATTGCCCTCCGTGTGCCCACATCCAACGTCTCAGTAGTGGACCTTGTTGTCCTGGTTAACGACGGTGAGACTTTTGCAGAGGAGGTGAATGCAGCTTTCAGGAACAGTGCAGAGAAGGAGCTCAATGGTATACCGTCAATGTGCGATGAACCACTTGTATCAGTAGACTTCAGGTGCTCTGATGTATCCTCCACGGTCGACTCATCCCTTACCATGGTTATGGGAGATGACATGGTTAAGGTGGTGGATCTGGCTGACATTGTTGCCAACAACTGTAAGTGA 996 49.4 MIPTRSCKKCEKVVWTPHFGSFVSHSKAICRPPQFRFASLCLQQHSDFLFLVAFQTSDWIGDKRYKKSGAVEAKLKVAINGFGRIGRNFLSTTPYLASLRQKLSLWGRVFVDREGAGKHIEAGAKKVLITAPGKADIPTYVVGVNAETYNPAEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQRLFDASHRVLRPVRAAVLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTSNVSVVDLVVLVNDGETFAEEVNAAFRNSAEKELNGIPSMCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVVDLADIVANNCK* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22845051 22853689 - Vvi1g1384 Vvi1g1384 770584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1384 331 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 159 166 IPR020830 GO:0016620
Vvi1g1384 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 177 IPR036291 -
Vvi1g1384 331 Gene3D - 109 159 - -
Vvi1g1384 331 SMART gp_dh_n_7 75 161 IPR020828 GO:0051287
Vvi1g1384 331 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 43 92 IPR020831 GO:0016620
Vvi1g1384 331 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 109 328 IPR020831 GO:0016620
Vvi1g1384 331 Gene3D Dihydrodipicolinate Reductase; domain 2 160 320 - -
Vvi1g1384 331 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 166 320 IPR020829 GO:0016620
Vvi1g1384 331 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 IPR020831 GO:0016620
Vvi1g1384 331 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 155 173 IPR020831 GO:0016620
Vvi1g1384 331 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 182 198 IPR020831 GO:0016620
Vvi1g1384 331 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 238 255 IPR020831 GO:0016620
Vvi1g1384 331 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 IPR020831 GO:0016620
Vvi1g1384 331 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 161 320 - -
Vvi1g1384 331 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPA1, CHLOROPLASTIC 43 92 - -
Vvi1g1384 331 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPA1, CHLOROPLASTIC 109 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1384 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - ming:122077761 353.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1384 Vvi14g1054 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1