Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1385 ATGAAAAGACCAGAAGACATCCCTGTTCCTTCAAGGGATCTAAGTGTTAGTTTTGGCTATCAATGCAGCACTACCAGCCCTCCCTCTGTTAATGTACCAAATGGAATTGATTTTTCGGATGGGTTCATGATTCAAAATTCTAATATGAAAACGAGGAGTAGTTCGTTTTCTTGTCTAATAGAATCCTCCAGCTTTCTCAATGCGATTGACGTACAAATGGCTGGTGGAGCTGCAGGTGAGGACAGAGTCCAAGCTGTGTGTTCTGAAGAAAATGGATGGCTCTTCTGTGGCATATATGATGGATTTAATGGTCGGGATGCTGCTGACTTTTTAGCTGGAACTCTTTATGAGAACATTGGGTTTTATCTTCATTTGCTGGAATGGCGTGCAAAAAAGCAGCATGATCCATTTGAAAGGGTAGGAACTATCGTTCCACATTCTTCAGGTGGAGAATTCACATGTGAACAGTTCCACCATAGTGTGACGGATTGCCTTATTCGGGCTGTTGCCCAAGCTGAAAGTGATTTTATGTACATGGTTGAACAGGAAATGGAAGATCGGCCTGACCTAGTGTCTGTTGGATCATGCATCTTGGTGGGGCTTCTTCATGGGAACAACTTCTATGTTTTAAATTTAGGTGATAGCAGGGCCATACTAGCAACAAATGAGACTCGAGAGGATGGTAAATTGAAGGTCATCCAGCTGACAGAAACTCATAGTGTGGACAATGAAATCGAATATAGAAAACTTTTGGATGATCACCCTGAAGATCCTTCACCTGTCATTAATGGAAGAGTGAAAGGAAAGCTAAAGCTAACCCGGGCATTTGGAGTTGGTTATCTTAAAAAGAGCAAAATGAATGATATGCTGATGGGCATTCTTCGAGTACGAAATTTGTGCAGTCCTCCTTATGTTTACACACATCCATTCACCATGAGCCATACAGTGTCAGAGAAAGATCAATTCATTGTTTTGGGAAGTGATGGACTCTTTGATTTCTTCAGCAATGATGAAGTTGTGCAACTTGTGCATCTTTTTATTCAGCATAACCCCTCTGGTGATCCTGCAAAACATCTGGTTGAACAGCTCATCCTCAAAGCAGCTGATAATGCAGGCTTCAGTACTGAAGAGTTGATGATGATACCTGCTGGGAGAAGAAGGAAGTACCATGACGATGTTACTGTTATTGTAATCATGCTTGGTAATAAGCAATGGACTTCTACTGCTTCAACATCTCTGTAG 1242 41.63 MKRPEDIPVPSRDLSVSFGYQCSTTSPPSVNVPNGIDFSDGFMIQNSNMKTRSSSFSCLIESSSFLNAIDVQMAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGTLYENIGFYLHLLEWRAKKQHDPFERVGTIVPHSSGGEFTCEQFHHSVTDCLIRAVAQAESDFMYMVEQEMEDRPDLVSVGSCILVGLLHGNNFYVLNLGDSRAILATNETREDGKLKVIQLTETHSVDNEIEYRKLLDDHPEDPSPVINGRVKGKLKLTRAFGVGYLKKSKMNDMLMGILRVRNLCSPPYVYTHPFTMSHTVSEKDQFIVLGSDGLFDFFSNDEVVQLVHLFIQHNPSGDPAKHLVEQLILKAADNAGFSTEELMMIPAGRRRKYHDDVTVIVIMLGNKQWTSTASTSL* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22854789 22859753 - Vvi1g1385 Vvi1g1385 770585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1385 413 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 3 59 - -
Vvi1g1385 413 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 60 413 - -
Vvi1g1385 413 Pfam Protein phosphatase 2C 87 355 IPR001932 -
Vvi1g1385 413 Gene3D - 44 409 IPR036457 -
Vvi1g1385 413 SMART PP2C_4 54 398 IPR001932 -
Vvi1g1385 413 SUPERFAMILY PP2C-like 77 402 IPR036457 -
Vvi1g1385 413 ProSiteProfiles PPM-type phosphatase domain profile. 65 400 IPR001932 -
Vvi1g1385 413 CDD PP2Cc 78 398 IPR001932 -
Vvi1g1385 413 PANTHER PROTEIN PHOSPHATASE 2C 3 59 IPR015655 GO:0004722|GO:0006470
Vvi1g1385 413 PANTHER PROTEIN PHOSPHATASE 2C 60 413 IPR015655 GO:0004722|GO:0006470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1385 - - vvi:100264381 707.212