Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g139 ATGTCTTTAATCGAATTGTTAGGTTCAGGTATGTATGATATTTGTGCTTACTACTTACTATTAAAATTACTGGGAATAGGTAATTCCAAGATGGTTGTTCTTGCAGCTTCTATTGTAAGCAAGTCTGGGAAAGTGCTCGTTTCTAGGCAATTTGTGGATATGACTCGTATAAGAATTGAGGCTCTTCTTGCTGCTTTTCCCAAGTTGGTAGGCACAGGGAAACAACATACTTATGTTGAGACTGAAAATGTGCGGTATGTTTACCAGCCAATTGAGGCATTGTACCTGCTATTAGTAACTAATAAACAGAGCAACATTCTTGAAGACTTGGAAACTCTGAGGCTGCTTTCAAAGCTTGTTCCTGAATATTCTGTCTCTCTGGATGAGGAGGGTGTTTGCAAGACAGCTTTTGAGCTCATTTTTGCATTTGATGAGGTCATCTCCCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGCAGTACTGTGAGATGGAGAGTCACGAAGAGAAGCTGCACAAGCTGGTATTGCAGAGCAAGATAAATGAGACAAAGGATGTGATGAAGCGCAAAGCTAGTGAGATAGACAAAAGCAAGATTGAAAAGAATAGAGGTGAGAAAGGAGGTTTTATGTCTTTACAGTCGATGGGTTCTGGAAGAATTGAGAGTACCTTTAATGATATGAGTATATCTAGCAGTGGTGGTGGTGGTTTTGGAAGTGGCTCTGGGTTTGGATTGACCACTGATATCGACTCCTTCTCTACCAAGTCCAAAGGTCGTCCATCTTCATCTGCCACTGCTCCTCCTAAAGGCCTTGGTATGCAGCTTAACAAGACACAAAAGGCAAACCAGTTCTTGGAATCTTTGAAGGCTGAAGGCGAAGTGATTCTTGAGGATGTGCACCCCAAAGCTGGTCCAACCAGGTCAGCCGCACCACCACTAACTGACCCCATTACATTGAGTGCTGAAGAGAGACTTAATGTGACGCTAAAGCGCGATGGTGGAGTGAGCAACTTCGATGTTCAGGGAACATTGTCACTTCAAATCCTTAACCAGGAAGATGGATTAATCCAAGTTCAGATCGAGACTGGGAGCAATCCAGGCATCCTTTTCAAAACTCATCCTAACATCAACAAAGAACTATTTTCGAATGAAAATATTCTAGGCCTGAAGGATCCAAATAGGCCATTTCCCACTGGTCAAGGAGGTGATGCGGCAGGTGTCGGTCTTTTGAAGTGGAGAATGCAAAGTGTGGATGAGTCAGATGTGCCACTAACAATTAACTGCTGGCCATCTGTTTCTGGAAATGAAACTTATGTCAGCATTGAATACGAAGCTTCATCAATGTTTGATCTGCGAAATGTTGTGATCTCGGTTCCTCTTCCAGCTCTTCGTGAGGCACCTAATGTGAGGCAAATTGATGGGGAATGGAGGTACGACTCCAGAAATTCTATCTTGGAGTGGTCCATACTTCTCATTGATAACTCAAATCGCAGTGGATCAATGGAGTTTGTTGTTCCTCCAGCAGATTCGTCAGTTTTCTTTCCCATTTCTGTTCGGTTTACTGCTGCAAAGACATTCAGTGACCTAAAGGTTGTTAATGTTTTACCGCTGAGAGGTGGCCCGCCTCCGAAGTTTTCTCAGAGAACCACTCTAATCACGGAGAACTATCAAGTGGTGTAA 1686 43.12 MSLIELLGSGMYDICAYYLLLKLLGIGNSKMVVLAASIVSKSGKVLVSRQFVDMTRIRIEALLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSVSLDEEGVCKTAFELIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVLQSKINETKDVMKRKASEIDKSKIEKNRGEKGGFMSLQSMGSGRIESTFNDMSISSSGGGGFGSGSGFGLTTDIDSFSTKSKGRPSSSATAPPKGLGMQLNKTQKANQFLESLKAEGEVILEDVHPKAGPTRSAAPPLTDPITLSAEERLNVTLKRDGGVSNFDVQGTLSLQILNQEDGLIQVQIETGSNPGILFKTHPNINKELFSNENILGLKDPNRPFPTGQGGDAAGVGLLKWRMQSVDESDVPLTINCWPSVSGNETYVSIEYEASSMFDLRNVVISVPLPALREAPNVRQIDGEWRYDSRNSILEWSILLIDNSNRSGSMEFVVPPADSSVFFPISVRFTAAKTFSDLKVVNVLPLRGGPPPKFSQRTTLITENYQVV* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1360443 1369503 + Vvi1g139 Vvi1g139 769339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g139 561 Gene3D Mu homology domain, subdomain B 320 535 - -
Vvi1g139 561 CDD Delta_COP_N 34 163 - -
Vvi1g139 561 ProSiteProfiles Mu homology domain (MHD) profile. 316 561 IPR028565 -
Vvi1g139 561 Gene3D - 33 171 - -
Vvi1g139 561 PANTHER S-ACYLTRANSFERASE 31 560 - -
Vvi1g139 561 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 318 560 IPR036168 -
Vvi1g139 561 SUPERFAMILY SNARE-like 35 172 IPR011012 -
Vvi1g139 561 Gene3D Mu homology domain, subdomain B 426 523 - -
Vvi1g139 561 MobiDBLite consensus disorder prediction 252 276 - -
Vvi1g139 561 CDD AP_delta-COPI_MHD 317 558 - -
Vvi1g139 561 MobiDBLite consensus disorder prediction 252 271 - -
Vvi1g139 561 Pfam Adaptor complexes medium subunit family 316 535 IPR028565 -
Vvi1g139 561 PANTHER COATOMER SUBUNIT DELTA 31 560 IPR027059 GO:0006890|GO:0030126
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g139 K20471 COPD, ARCN1, RET2; coatomer subunit delta - vvi:100247342 1021.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002817 2 2 2 3 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 1 1 52