Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1394 ATGGTGAGGCTCACTGCAGACCTGATTTGGAAAAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGGACCAATTTGATACCATTGATTTGTCTGACAATGAGATTGTCAAGCTCGAAAACTTGCCTTATCTTAATCGGTTGGGTACTTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCAACTTGGCAGAGATTGATCCCCTTTCATCCTTTCCAAAGCTGCAGTTCCTTAGTCTCTTGGACAACAATATTACAAAGAAACCGAATTATAGGTTGTATGTAATTCACAGACTAAAGTCACTTCGGTTGCTAGATTTCAAGAAAGTAAAAAATAAGGAGAGACTGGAAGCAGAGAATTTGTTTGCATCTAAAGAAGTTGAAGAAGAGGCTAAACAAGAACCCCTGAAGACATTCACACCAGGTGAAATGCCAAATGCTTTAGAACCTGCAGAGGAACAACAGATACCAAAAGTGGTGGGCCCTTCACCAGAGGAACTTATAGCTATCAAGGCCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAACACCAGGGCTGATGTTGTGAATGAAAAGGATGACAAAATGGTCTCCAGTAATCCAAATACAAGTCGAGATGAACCAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGGAATAG 864 42.01 MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENLPYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSLLDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFTPGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKSLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22898899 22922421 - Vvi1g1394 Vvi1g1394 770594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1394 287 Pfam Leucine-rich repeat 1 173 - -
Vvi1g1394 287 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Vvi1g1394 287 MobiDBLite consensus disorder prediction 246 287 - -
Vvi1g1394 287 PANTHER BNAC08G13840D PROTEIN 1 252 - -
Vvi1g1394 287 MobiDBLite consensus disorder prediction 247 287 - -
Vvi1g1394 287 ProSiteProfiles Leucine-rich repeat profile. 43 64 IPR001611 GO:0005515
Vvi1g1394 287 PANTHER U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A 1 252 IPR044640 GO:0000398|GO:0030620
Vvi1g1394 287 Coils Coil 153 173 - -
Vvi1g1394 287 ProSiteProfiles Leucine-rich repeat profile. 89 110 IPR001611 GO:0005515
Vvi1g1394 287 SUPERFAMILY L domain-like 6 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1394 K11092 SNRPA1; U2 small nuclear ribonucleoprotein A' - vvi:100264276 540.806
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0631 Cone15ag0640 . . . . Chy11g01844 Cme11g02381 . . . . . . . . . . . . . . . Cpe17g00951 . . . . . . . . . . . . . . . Lsi09g01779 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013718 1 1 2 1 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 0 1 25