Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1395 ATGTTGCAGTGGGCCATAGGTCATTCTGATCCAACAAAATTAAAGGAAACGGCACAAGATGTCCAACGTTTCTCTCCTAACGAGCTAAAGAAGCGTCAAATGGAAATAAAGGAACTAATGGAGAAACTGAAAATGCCATCAGATGCTCAGTTGATGCAAATTGCAATAGCTGACTTGAATAACTCCTCCCTGCCAATGGAAGACCACCATCGTGCACTACAGGAGCTTTTGATACTCGTTGAGCCAATAGATAATGCAAATGACTTGAACAAACTTGGAGGCCTTACTGTAGTAATTCGTGAGCTTGATAATCCGGATCCAGAGATAAGGAAAACTTCTGCATGGATTCTTGGAAAAGCCAGTCAAAATAACCCAGTAGTCCAGAAGCAGGTCCTGGAACTTGGGGCATTGCCAAAGCTAATGAAGATGGTAAATTCTAGTTTTGTGGAAGAAGCAACAAAAGCATTATATGCTGTTTCAGCCTTGATCAGAAACAATTTAGCTGCTCAGGAATTGTTTTATGCCAAAGCTGGAGATTTGATGCTTCAGGACATACTGAGCAACCCAAGCATTGATATCAGACTACGCAGGAAAACAGTGTTTCTTGTGGGGGATTTAGCTGAGTGTCAACTGGAAAGTACCCATAAAGCTGAGCTACCTTTTTTTAGCAATCGCCACTTCTTAAAATCTGTGGTTGATCTGACTGCATCATCTGACCTTGATCTACAGGAGAAGGCCCTCATTGCAGTTAAGAATCTCCTGCAACTCAGGACAACTGAAGCACTAGTTTTCAAGGACTACTGTGATTTGGATGGGGCATTGGAGAGGATGAGGAAGCAACTGCAGCAATTAATGGACGAGGAATATCAAAGAGATTATGTGATGGATTTAGAAAGTCTTTGCAGAGAAGTGGAGCTCATTTTCCATAAAAAACTGGGGAAGGTGACACATGTTCCAACATGA 963 41.95 MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLNNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDLMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDLDLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLESLCREVELIFHKKLGKVTHVPT* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22940963 22960324 + Vvi1g1395 Vvi1g1395 770595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1395 320 PANTHER PROTEIN FOLDING REGULATOR 1 316 - -
Vvi1g1395 320 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 316 - -
Vvi1g1395 320 Pfam Nucleotide exchange factor Fes1 1 89 IPR013918 -
Vvi1g1395 320 Gene3D - 31 305 IPR011989 -
Vvi1g1395 320 SUPERFAMILY ARM repeat 44 287 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1395 K09562 HSPBP1, FES1; hsp70-interacting protein - vvi:100266149 623.239
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1395 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00149 Cam06g0065 Cec06g0165 Cco06g0159 Clacu06g0160 Cmu06g0157 Cre06g0931 . . . . . . Chy11g01847 . . . . . . . . . Sed09g0354 . . . . . . . . Bhi12g02377 Tan06g1429 Cmetu11g2072 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014136 1 1 0 1 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 1 1 23