Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g140 ATGTCATTCAACAAGTCTCCTCTTTCAAGGCTTAAAAGGAGTCTCTCCCTTCAATCATGCTTCCCTGAAGTGAGGTCTGCAGAGGCATCTGGTTGCAAATCTCCTGATGACAATGCCTCAAGCGTAAATGGTGGACGTTCTTTTGATGACATACGTCATAATGTTGATACCTGCTTGGACATAGATGATCAGGGCATTTCCCCAGCTTCCAGTGGTGGCAAAACCTCTACTGCATCAAGGCGTATATTCCCTCTAGAAAGCAGGAGTCCGTGCAGATCAGTTTCTGATATCCAGAACTCTAAGTCTGAACTGCTTCAAGCTGTTCCAGAGGCAATTGGAAGTGATGCCCATGTGGCTTTGGATCTGTCCTCTTGGCCAGGTGGTTCCACCCACCCCAAGAATGAAACCAGCAAATCTGATGCAAGCCCAGTTAGACAAGCTGTGGATCATAGTTTTCCATTGGCTTCAGTGCATTATTCAGGTGCAATTTCTGGGGAGATAAGAAGCAATGGCCTTAAAGCATATGTTCTCCTGTGTCTTGCTGCACTCAATGGTGATTGGAAAAGTGCAAAAGCATTCCTGGAGTCAAATCCACAAGCAGTGAGAGCGAGGATCACAAGGCGTTCAGAAACTGCTCTTCATATTGCTGCCGGGGCAAGACATACAAGGTTTGTTGAGGAGCTAGTTAAATTAATGAAACCAGATGACTTGGCATTGCAGAACAAGGTTGGAAACACTGCTCTTTGCTTTGCTGCTGCATCTGGAATCACAAGGATTGCTGAGGTAATGGTGAATAAGAACAGGGAGTTACCAATGATTCGCGGTAGTAAAGGAGTAACACCACTCTACATGGCTGCATTAGTAGGTCACAAAGACATGGTAAGATATCTCTACTCTGTGACTGAGGAAGATAATTTAACCAAAGAAGATCGCATTGGACTTCTTGTTGCTGCTATTACTGCCAATCTATTTGATGTAGCCTTGCATATGCTTCATGAGGACCCAGAATTAGCTATGGCTCGAGATGGTGCATCTATTCATGTTATTCCAGGTTTCAAGTCAGTTTATGACAAGAAATTGATGCATATCCAGGCACTTGAGCTTGTCCAGCAACTTTGGGACAAAATTCTGTCCCTGGATCATGACCCAAAGATTGGGGAGTTAATCAGAACTCCTTCACGGTTACTATTTACTGCTGCTGAGTTGGGGATTGTAGAGTTTATAACTGTCCTCATCCGATCATATCCTGATCTTATTTGGAAAGTCAATGACCAAAGTCAAACTATATTTCATGTTGCAGTGGCACATCGCCAGGAAAAAATTTTTAATCTCATATATGAGATTGGTGCTCATAAGGATTATATTGCAGCATATAAAGACGAGAAGAACAATAACATGTTGCATTTGGCAGGAAAGTTAGCACCATCGAATCGACTGAAAATTGATTCTGGTGCAGCCTTTCAATTGCAAAGGGAATTGCATTGGTTCAAGGAGGTAGAAAAGATTATTCAACCTTCATACACAGAAATGAAAAATGAACAGGGGAGAACACCTCAGATTCTGTTTACAGAGGAGCACAAGGATTTAGTGCGAGAAGGTGAGAAGTGGATGAAGGATACTGCATCTTCATGCATGGTTGTTGCAACACTCATTGCCACTGTGATGTTTGCTGCTGCCTTCTCTGTACCTGGTGGCAACGATGATGACACAGGCAGGCCTATTTTCCTAACAAAAAAGTCCTTTTTGGTTTTTGCCATTTCAGATGCACTTGCTCTGTTCTCCTCTGCCACCTCAATATTGATATTCCTGTCCATTCTCACCTCACGCTATGCTGAGGAAGATTTCCTTGAGTCACTACCCAACAGGTTGATAATAGGCCTTGCAACCCTCTTCATCTCTGTTGCCACCATGATGATAGCTTTTTGTGCCACTCTTTTTATTGTTCTTGGTCCAGAATTAGTGTGGGTTGCAAATCCAATGGCTTTAGTTGCTTGCGTTCCTGTAACCTTGTTTCCTTTGTTAAAATTTCCCCTTTTCATTGATATGATCAGTCATAGATATAGATCTAGCATTATCTTTCGTCCAAATGTCAATGTTACTCTGCCCTTGCCGTATGCTATATTTCTCAGTCTATCCTTATCACTGATTAATCCATTCTGTTGCAACCAGGCTTTCCCTTCGGCATCAACATCCATTCCATTTCTATTTGCTATTGATCAATGCACCGAACAGCTACCTGGGGTGTCTCTCAGGAGGGACAGAGACAGAGAGAGAGAGAACGGAGAAGAGAGAGAAGAAACGACCCTCATCATCCACCGCCAGGGTAAGGGAGTTGGGCTTTATACGATGGCGGCGGACAGTAGCTCGGTTGATGTGATTCTCGATTTTCTGCGGAGAAATCGGTTTACTAGAGCGGAGGCCGCATTGCGGAGCGAGCTCGGTAACCGCCCTGATTTGAATGGCTTTCTTCAGAAGCTAACCCTAGAGGAAAAGGCTGATTCGGGTAATGTGGCGGGGGTGGAGGCTGCGAATGGGGATGGTTCTCAAGCACAGGGGTCGGGTTCGAAGGAGCTTGTAATCGTTAAAGAGATAGAGTGTGGGGAGAGGAATAAACCGCCTAGTGGGGATGCCACTAACATGAGAAGTGAAAAGAACTTCGCGTTTTCTAAGGGTTCGGAGGACACTGTGCTAGACTTGTATACTTGGAAATTCAATGCGGATCCATACCGGAACGAAGGTGGCAGTAGTGGTGTTAGTACCAAAAACAATAGCAACAGCAACAGCGTTTTGGAGCTGCAGGTATATGAACAATCTAGGTATCGAATTGGTGAGCTTTCTGATGCCGTTGCTAGTAAAGCCGACGCGAAATCCGGAGAAGAAGAGATTGGTTTTTCTGGTGAGAAGAGAGGTTCTTGGGTTGGAAGTTCTAGTGAAGTAACCACGGAGACAAACAAGTATGACCGAAAGGAACTTGATCAGAAACTTAAAAGTAGTAATAGTATCTTGTACTCTAAAGGCAACTTTGCTGATAATCCATGGTCAGAGCCCATGCATTCATCTTCAGACCAGTGGAAAAATTGTTCTATCAAGACTGTTTTCCCATTCTCCAAAGGGGATGTGTCAACCAGTTATGATAATGCTGCTGGTTCTGAGAAGAAGGATGGAAAGAGGAAAGCTGAGATGGGTGGTATTCGGGCAGCAATCAAAGAGCAGGTAGATGAGGTTGGGCGAGCTTTGTACTTTGGCAAGTCTCAAGGGAGTTCAGAGCTGAAGACCATCAGCAGTCTAAACTTTCCACTTGTATTAGAGTGTCAGAAGGAAGAATTACCTCGGTTGCCTCCTGTTAAACTTAAATCGGAGGAGAAACCATTGAATATTAGCTGGGAGGAGAAGTTTGAGCATGAGGGACCTGGTTCTAAGATTGCTGGTGTAGATAATGCGTTTCTTATAGGGTCGTATCTGGATGTTCCCATTGGACAAGAAATCAACTCTTCAGGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGGATTAAGTGAATCTATTGACTATCCAAATGAGTATTGGGATTCTGATGAATATGATGACGATGATGATGTTGGATACATGAGACAACCTATTGAAGATGAAACCTGGTTTCTGGCTCATGAAATTGATTACCCAAGTGACAATGAAAAAGGAACAGGGCATGGGAGTGTCCCAGACCCACAGGAAAGAGGTCCAACCAAAGATGAAGACGATGATCAATCTTTTGCAGAGGAGGATTCTTATTTCTCCGGGCTGTCGGTGACTGAAATGTATGGGAGGACTGAAGAAAATGATTTAATAGCTCAATATGATGGACAATTAATGGATGAAGAGGAACTGAATTTGATGCGTGCAGAACCTGTATGGCAGGGATTTGTCACTCAGACAAATGAACTTATCATGTTAAGGGATGGGAAGGTTATGAATGATTGTGGGAGGCCAAGGCTGGATGATAATTGTATGGATGATGATCAGCATGGTTCGGTTAGATCAATTGGTGTAGGGATCAACAGTGATGCTGCTGATATTGGCAGTGAAAAATATAATGATAGATCAAAGAGGTTGGTACAGGCAAGCTCTAGTAAATCTTTATGGTCAAATAATTGCAATGCTCCTACCAGTGATGAAACTGATGATTGTTTGAATGCTTTGATGAGGAATGCTGACATGCTTGCTTCATGGAGGCGGAAAAGCAGTGATTCTTCACCTGTCAAGAGTTCTAAAGATGAAAATAATGCTAATGCTGTTAGATCAGAGAACTCTTCTCCCTCAACTCTTTCTAATTATGGTTACAATGAAAGAGGACATGTGAAGAAAGAAGAGGATGAAAAAACTGGTGGTGCAAGAGAAGAAGATCCAGGAGTGTCATTGGAAGATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGAACTGGGTTTGAGGAGGACAAAAACTTCCATGTTGTTTTAAATTCAGTCATAGCTGGGCGCTATCATGTTACCGAGTATCTTGGGTCAGCTGCATTCAGCAAGGCTATTCAAGCACACGACCTACATACAGGCATGGATGTTTGTGTGAAAATTATAAAGAACAACAAGGATTTTTTTGATCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAGAACATTTATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATAGCAGATGTGAGGTGAAGGTCATTGACCTTGGAAGTAGTTGTTTTGAAACAGATCATCTCTGCTCATATGTTCAATCTAGGTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACATATAAATATTTCACCAAAAATCACATGCTCTATGAACGGAATCAGGACACCAACAGACTGGAATACCTCATCCCAAAAAAGACATCCTTGAGGCACCGGTTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATATGCTTGAAATTAACCCAAAAAAGCGCCCTTCTGCTTCTGAGGCTTTGAAGCACCCATGGTTATCATACCCATACGAGCCTATATCATCTTGA 5568 42.96 MSFNKSPLSRLKRSLSLQSCFPEVRSAEASGCKSPDDNASSVNGGRSFDDIRHNVDTCLDIDDQGISPASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVPEAIGSDAHVALDLSSWPGGSTHPKNETSKSDASPVRQAVDHSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGASIHVIPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFRPNVNVTLPLPYAIFLSLSLSLINPFCCNQAFPSASTSIPFLFAIDQCTEQLPGVSLRRDRDRERENGEEREETTLIIHRQGKGVGLYTMAADSSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLTLEEKADSGNVAGVEAANGDGSQAQGSGSKELVIVKEIECGERNKPPSGDATNMRSEKNFAFSKGSEDTVLDLYTWKFNADPYRNEGGSSGVSTKNNSNSNSVLELQVYEQSRYRIGELSDAVASKADAKSGEEEIGFSGEKRGSWVGSSSEVTTETNKYDRKELDQKLKSSNSILYSKGNFADNPWSEPMHSSSDQWKNCSIKTVFPFSKGDVSTSYDNAAGSEKKDGKRKAEMGGIRAAIKEQVDEVGRALYFGKSQGSSELKTISSLNFPLVLECQKEELPRLPPVKLKSEEKPLNISWEEKFEHEGPGSKIAGVDNAFLIGSYLDVPIGQEINSSGGKRTAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQERGPTKDEDDDQSFAEEDSYFSGLSVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLRDGKVMNDCGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEKYNDRSKRLVQASSSKSLWSNNCNAPTSDETDDCLNALMRNADMLASWRRKSSDSSPVKSSKDENNANAVRSENSSPSTLSNYGYNERGHVKKEEDEKTGGAREEDPGVSLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKFVNKNDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGSIDQGMLAKGRDTYKYFTKNHMLYERNQDTNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHMLEINPKKRPSASEALKHPWLSYPYEPISS* 1856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1386742 1417789 + Vvi1g140 Vvi1g140 769340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1425 1462 - -
Vvi1g140 1855 Gene3D - 168 477 IPR036770 -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 960 985 - -
Vvi1g140 1855 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1242 1279 - -
Vvi1g140 1855 ProSiteProfiles Protein kinase domain profile. 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Gene3D Phosphorylase Kinase; domain 1 1538 1625 - -
Vvi1g140 1855 ProSiteProfiles Ankyrin repeat region circular profile. 277 299 - -
Vvi1g140 1855 CDD PKc_DYRK_like 1544 1846 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 33 47 - -
Vvi1g140 1855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1670 1682 IPR008271 GO:0004672|GO:0006468
Vvi1g140 1855 SMART ANK_2a 173 203 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 277 308 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 243 272 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 425 454 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 208 239 IPR002110 GO:0005515
Vvi1g140 1855 Gene3D Transferase(Phosphotransferase) domain 1 1598 1846 - -
Vvi1g140 1855 SUPERFAMILY Ankyrin repeat 178 470 IPR036770 -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1464 1484 - -
Vvi1g140 1855 SUPERFAMILY Protein kinase-like (PK-like) 1533 1848 IPR011009 -
Vvi1g140 1855 PANTHER - 791 1378 - -
Vvi1g140 1855 PANTHER - 1385 1853 - -
Vvi1g140 1855 Pfam Domain of unknown function 534 648 IPR026961 -
Vvi1g140 1855 Pfam Protein kinase domain 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Coils Coil 1496 1516 - -
Vvi1g140 1855 PANTHER DUAL SPECIFICITY PROTEIN KINASE 1385 1853 - -
Vvi1g140 1855 PANTHER DUAL SPECIFICITY PROTEIN KINASE 791 1378 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 127 143 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 123 143 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1425 1494 - -
Vvi1g140 1855 SMART serkin_6 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Pfam Ankyrin repeats (3 copies) 178 266 IPR002110 GO:0005515
Vvi1g140 1855 MobiDBLite consensus disorder prediction 26 47 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76494 PF00069 Pkinase 3.30E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g140 - - vri:117924562 2093.16