Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g140 ATGTCATTCAACAAGTCTCCTCTTTCAAGGCTTAAAAGGAGTCTCTCCCTTCAATCATGCTTCCCTGAAGTGAGGTCTGCAGAGGCATCTGGTTGCAAATCTCCTGATGACAATGCCTCAAGCGTAAATGGTGGACGTTCTTTTGATGACATACGTCATAATGTTGATACCTGCTTGGACATAGATGATCAGGGCATTTCCCCAGCTTCCAGTGGTGGCAAAACCTCTACTGCATCAAGGCGTATATTCCCTCTAGAAAGCAGGAGTCCGTGCAGATCAGTTTCTGATATCCAGAACTCTAAGTCTGAACTGCTTCAAGCTGTTCCAGAGGCAATTGGAAGTGATGCCCATGTGGCTTTGGATCTGTCCTCTTGGCCAGGTGGTTCCACCCACCCCAAGAATGAAACCAGCAAATCTGATGCAAGCCCAGTTAGACAAGCTGTGGATCATAGTTTTCCATTGGCTTCAGTGCATTATTCAGGTGCAATTTCTGGGGAGATAAGAAGCAATGGCCTTAAAGCATATGTTCTCCTGTGTCTTGCTGCACTCAATGGTGATTGGAAAAGTGCAAAAGCATTCCTGGAGTCAAATCCACAAGCAGTGAGAGCGAGGATCACAAGGCGTTCAGAAACTGCTCTTCATATTGCTGCCGGGGCAAGACATACAAGGTTTGTTGAGGAGCTAGTTAAATTAATGAAACCAGATGACTTGGCATTGCAGAACAAGGTTGGAAACACTGCTCTTTGCTTTGCTGCTGCATCTGGAATCACAAGGATTGCTGAGGTAATGGTGAATAAGAACAGGGAGTTACCAATGATTCGCGGTAGTAAAGGAGTAACACCACTCTACATGGCTGCATTAGTAGGTCACAAAGACATGGTAAGATATCTCTACTCTGTGACTGAGGAAGATAATTTAACCAAAGAAGATCGCATTGGACTTCTTGTTGCTGCTATTACTGCCAATCTATTTGATGTAGCCTTGCATATGCTTCATGAGGACCCAGAATTAGCTATGGCTCGAGATGGTGCATCTATTCATGTTATTCCAGGTTTCAAGTCAGTTTATGACAAGAAATTGATGCATATCCAGGCACTTGAGCTTGTCCAGCAACTTTGGGACAAAATTCTGTCCCTGGATCATGACCCAAAGATTGGGGAGTTAATCAGAACTCCTTCACGGTTACTATTTACTGCTGCTGAGTTGGGGATTGTAGAGTTTATAACTGTCCTCATCCGATCATATCCTGATCTTATTTGGAAAGTCAATGACCAAAGTCAAACTATATTTCATGTTGCAGTGGCACATCGCCAGGAAAAAATTTTTAATCTCATATATGAGATTGGTGCTCATAAGGATTATATTGCAGCATATAAAGACGAGAAGAACAATAACATGTTGCATTTGGCAGGAAAGTTAGCACCATCGAATCGACTGAAAATTGATTCTGGTGCAGCCTTTCAATTGCAAAGGGAATTGCATTGGTTCAAGGAGGTAGAAAAGATTATTCAACCTTCATACACAGAAATGAAAAATGAACAGGGGAGAACACCTCAGATTCTGTTTACAGAGGAGCACAAGGATTTAGTGCGAGAAGGTGAGAAGTGGATGAAGGATACTGCATCTTCATGCATGGTTGTTGCAACACTCATTGCCACTGTGATGTTTGCTGCTGCCTTCTCTGTACCTGGTGGCAACGATGATGACACAGGCAGGCCTATTTTCCTAACAAAAAAGTCCTTTTTGGTTTTTGCCATTTCAGATGCACTTGCTCTGTTCTCCTCTGCCACCTCAATATTGATATTCCTGTCCATTCTCACCTCACGCTATGCTGAGGAAGATTTCCTTGAGTCACTACCCAACAGGTTGATAATAGGCCTTGCAACCCTCTTCATCTCTGTTGCCACCATGATGATAGCTTTTTGTGCCACTCTTTTTATTGTTCTTGGTCCAGAATTAGTGTGGGTTGCAAATCCAATGGCTTTAGTTGCTTGCGTTCCTGTAACCTTGTTTCCTTTGTTAAAATTTCCCCTTTTCATTGATATGATCAGTCATAGATATAGATCTAGCATTATCTTTCGTCCAAATGTCAATGTTACTCTGCCCTTGCCGTATGCTATATTTCTCAGTCTATCCTTATCACTGATTAATCCATTCTGTTGCAACCAGGCTTTCCCTTCGGCATCAACATCCATTCCATTTCTATTTGCTATTGATCAATGCACCGAACAGCTACCTGGGGTGTCTCTCAGGAGGGACAGAGACAGAGAGAGAGAGAACGGAGAAGAGAGAGAAGAAACGACCCTCATCATCCACCGCCAGGGTAAGGGAGTTGGGCTTTATACGATGGCGGCGGACAGTAGCTCGGTTGATGTGATTCTCGATTTTCTGCGGAGAAATCGGTTTACTAGAGCGGAGGCCGCATTGCGGAGCGAGCTCGGTAACCGCCCTGATTTGAATGGCTTTCTTCAGAAGCTAACCCTAGAGGAAAAGGCTGATTCGGGTAATGTGGCGGGGGTGGAGGCTGCGAATGGGGATGGTTCTCAAGCACAGGGGTCGGGTTCGAAGGAGCTTGTAATCGTTAAAGAGATAGAGTGTGGGGAGAGGAATAAACCGCCTAGTGGGGATGCCACTAACATGAGAAGTGAAAAGAACTTCGCGTTTTCTAAGGGTTCGGAGGACACTGTGCTAGACTTGTATACTTGGAAATTCAATGCGGATCCATACCGGAACGAAGGTGGCAGTAGTGGTGTTAGTACCAAAAACAATAGCAACAGCAACAGCGTTTTGGAGCTGCAGGTATATGAACAATCTAGGTATCGAATTGGTGAGCTTTCTGATGCCGTTGCTAGTAAAGCCGACGCGAAATCCGGAGAAGAAGAGATTGGTTTTTCTGGTGAGAAGAGAGGTTCTTGGGTTGGAAGTTCTAGTGAAGTAACCACGGAGACAAACAAGTATGACCGAAAGGAACTTGATCAGAAACTTAAAAGTAGTAATAGTATCTTGTACTCTAAAGGCAACTTTGCTGATAATCCATGGTCAGAGCCCATGCATTCATCTTCAGACCAGTGGAAAAATTGTTCTATCAAGACTGTTTTCCCATTCTCCAAAGGGGATGTGTCAACCAGTTATGATAATGCTGCTGGTTCTGAGAAGAAGGATGGAAAGAGGAAAGCTGAGATGGGTGGTATTCGGGCAGCAATCAAAGAGCAGGTAGATGAGGTTGGGCGAGCTTTGTACTTTGGCAAGTCTCAAGGGAGTTCAGAGCTGAAGACCATCAGCAGTCTAAACTTTCCACTTGTATTAGAGTGTCAGAAGGAAGAATTACCTCGGTTGCCTCCTGTTAAACTTAAATCGGAGGAGAAACCATTGAATATTAGCTGGGAGGAGAAGTTTGAGCATGAGGGACCTGGTTCTAAGATTGCTGGTGTAGATAATGCGTTTCTTATAGGGTCGTATCTGGATGTTCCCATTGGACAAGAAATCAACTCTTCAGGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGGATTAAGTGAATCTATTGACTATCCAAATGAGTATTGGGATTCTGATGAATATGATGACGATGATGATGTTGGATACATGAGACAACCTATTGAAGATGAAACCTGGTTTCTGGCTCATGAAATTGATTACCCAAGTGACAATGAAAAAGGAACAGGGCATGGGAGTGTCCCAGACCCACAGGAAAGAGGTCCAACCAAAGATGAAGACGATGATCAATCTTTTGCAGAGGAGGATTCTTATTTCTCCGGGCTGTCGGTGACTGAAATGTATGGGAGGACTGAAGAAAATGATTTAATAGCTCAATATGATGGACAATTAATGGATGAAGAGGAACTGAATTTGATGCGTGCAGAACCTGTATGGCAGGGATTTGTCACTCAGACAAATGAACTTATCATGTTAAGGGATGGGAAGGTTATGAATGATTGTGGGAGGCCAAGGCTGGATGATAATTGTATGGATGATGATCAGCATGGTTCGGTTAGATCAATTGGTGTAGGGATCAACAGTGATGCTGCTGATATTGGCAGTGAAAAATATAATGATAGATCAAAGAGGTTGGTACAGGCAAGCTCTAGTAAATCTTTATGGTCAAATAATTGCAATGCTCCTACCAGTGATGAAACTGATGATTGTTTGAATGCTTTGATGAGGAATGCTGACATGCTTGCTTCATGGAGGCGGAAAAGCAGTGATTCTTCACCTGTCAAGAGTTCTAAAGATGAAAATAATGCTAATGCTGTTAGATCAGAGAACTCTTCTCCCTCAACTCTTTCTAATTATGGTTACAATGAAAGAGGACATGTGAAGAAAGAAGAGGATGAAAAAACTGGTGGTGCAAGAGAAGAAGATCCAGGAGTGTCATTGGAAGATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGAACTGGGTTTGAGGAGGACAAAAACTTCCATGTTGTTTTAAATTCAGTCATAGCTGGGCGCTATCATGTTACCGAGTATCTTGGGTCAGCTGCATTCAGCAAGGCTATTCAAGCACACGACCTACATACAGGCATGGATGTTTGTGTGAAAATTATAAAGAACAACAAGGATTTTTTTGATCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAGAACATTTATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATAGCAGATGTGAGGTGAAGGTCATTGACCTTGGAAGTAGTTGTTTTGAAACAGATCATCTCTGCTCATATGTTCAATCTAGGTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACATATAAATATTTCACCAAAAATCACATGCTCTATGAACGGAATCAGGACACCAACAGACTGGAATACCTCATCCCAAAAAAGACATCCTTGAGGCACCGGTTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATATGCTTGAAATTAACCCAAAAAAGCGCCCTTCTGCTTCTGAGGCTTTGAAGCACCCATGGTTATCATACCCATACGAGCCTATATCATCTTGA 5568 42.96 MSFNKSPLSRLKRSLSLQSCFPEVRSAEASGCKSPDDNASSVNGGRSFDDIRHNVDTCLDIDDQGISPASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVPEAIGSDAHVALDLSSWPGGSTHPKNETSKSDASPVRQAVDHSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGASIHVIPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFRPNVNVTLPLPYAIFLSLSLSLINPFCCNQAFPSASTSIPFLFAIDQCTEQLPGVSLRRDRDRERENGEEREETTLIIHRQGKGVGLYTMAADSSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLTLEEKADSGNVAGVEAANGDGSQAQGSGSKELVIVKEIECGERNKPPSGDATNMRSEKNFAFSKGSEDTVLDLYTWKFNADPYRNEGGSSGVSTKNNSNSNSVLELQVYEQSRYRIGELSDAVASKADAKSGEEEIGFSGEKRGSWVGSSSEVTTETNKYDRKELDQKLKSSNSILYSKGNFADNPWSEPMHSSSDQWKNCSIKTVFPFSKGDVSTSYDNAAGSEKKDGKRKAEMGGIRAAIKEQVDEVGRALYFGKSQGSSELKTISSLNFPLVLECQKEELPRLPPVKLKSEEKPLNISWEEKFEHEGPGSKIAGVDNAFLIGSYLDVPIGQEINSSGGKRTAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQERGPTKDEDDDQSFAEEDSYFSGLSVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLRDGKVMNDCGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEKYNDRSKRLVQASSSKSLWSNNCNAPTSDETDDCLNALMRNADMLASWRRKSSDSSPVKSSKDENNANAVRSENSSPSTLSNYGYNERGHVKKEEDEKTGGAREEDPGVSLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKFVNKNDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGSIDQGMLAKGRDTYKYFTKNHMLYERNQDTNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHMLEINPKKRPSASEALKHPWLSYPYEPISS* 1856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1386742 1417789 + Vvi1g140 Vvi1g140 769340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1425 1462 - -
Vvi1g140 1855 Gene3D - 168 477 IPR036770 -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 960 985 - -
Vvi1g140 1855 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1242 1279 - -
Vvi1g140 1855 ProSiteProfiles Protein kinase domain profile. 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Gene3D Phosphorylase Kinase; domain 1 1538 1625 - -
Vvi1g140 1855 ProSiteProfiles Ankyrin repeat region circular profile. 277 299 - -
Vvi1g140 1855 CDD PKc_DYRK_like 1544 1846 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 33 47 - -
Vvi1g140 1855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1670 1682 IPR008271 GO:0004672|GO:0006468
Vvi1g140 1855 SMART ANK_2a 173 203 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 277 308 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 243 272 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 425 454 IPR002110 GO:0005515
Vvi1g140 1855 SMART ANK_2a 208 239 IPR002110 GO:0005515
Vvi1g140 1855 Gene3D Transferase(Phosphotransferase) domain 1 1598 1846 - -
Vvi1g140 1855 SUPERFAMILY Ankyrin repeat 178 470 IPR036770 -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1464 1484 - -
Vvi1g140 1855 SUPERFAMILY Protein kinase-like (PK-like) 1533 1848 IPR011009 -
Vvi1g140 1855 PANTHER - 791 1378 - -
Vvi1g140 1855 PANTHER - 1385 1853 - -
Vvi1g140 1855 Pfam Domain of unknown function 534 648 IPR026961 -
Vvi1g140 1855 Pfam Protein kinase domain 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Coils Coil 1496 1516 - -
Vvi1g140 1855 PANTHER DUAL SPECIFICITY PROTEIN KINASE 1385 1853 - -
Vvi1g140 1855 PANTHER DUAL SPECIFICITY PROTEIN KINASE 791 1378 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 127 143 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 123 143 - -
Vvi1g140 1855 MobiDBLite consensus disorder prediction 1425 1494 - -
Vvi1g140 1855 SMART serkin_6 1544 1846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g140 1855 Pfam Ankyrin repeats (3 copies) 178 266 IPR002110 GO:0005515
Vvi1g140 1855 MobiDBLite consensus disorder prediction 26 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g140 - - - vri:117924562 2093.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g140 . . . . . . . . . Cmo18g00253 . . . . . Cpe09g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005079 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76494 PF00069 Pkinase 3.30E-50 CL0016 Vvi PK