Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g141 ATGGCGCGAAAATCCATTCTCAAATCAACTGTTGTGACCGTCTTATGCGTTTTTGGACTGTATGGGTTGTCCACCACTTTTTTCAACCCCATAAACCCTTACCACTCCAGGCTCGATCTTAGCCTCCCTCTTGATTCGTCGTCCAAGTCGCTTTCGCTGTTGAGCACTGATTCCGGGGAGAATTTGTCGAAATTTTCCCGGAACTTCGGGCCGGTGAAGGTGTACATGTACGATCTTCCGAGGAAGTTCACGTACGGCGTGATCGAGAGCTACGCGGTGGCTCGGGGAGGGCTGGAGAAGGTGCCGGTGGATGACGTGTCGTCGCTGAAGTACCCCGGGCATCAGCACTCCGGGGAGTGGTACTTGTTCTCGGACCTGATCCGGGAGGACCGGGGTAGGAGGTACGTTGTTAGGGTTTCGGATCCGGAGGAGGCGGATTTGTTCTACGTTTCGTTCTTTTCGTCTCTTAGTTTGGTGGTGAACCCAATTCGGCCAGCGAATGGGGAGGGTGCCGGAACTGGGTACAGCGATGAGGAGATGCAGGAGAGTTTGATGGAATGGTTGGAGCAGCAGGAGTATTGGAAGAGGAACAATGGGCGGGACCATGTGTTTATATGTCAGGATCCCAATGCTCTGCATCTGATTGTAGACAGAGTGAAGAATGGGGTGCTGCTTGTTTCGGATTTCGGGAGGCTGAGGAGCGACACAGCATCCTTGGTTAAGGATGTGATTTTGCCGTATGCCCATCGGATTAAGTCTTACAGTGGGGAGATTGGAGTTGAGAATCGAAAATCTTTGTTGTTCTTTATGGGAAATCGTTATCGCAAAGAGGGAGGAAAAATCCGGGACTTGCTTTTCCAAATACTTGAACAAGAAGAGGATGTTATAATAAAACATGGTGCACAATCCAGAGAGAGTCGACGTATGGCTTCACAAGGGATGCATTCATCAAAGTTTTGTTTACATCCTGCTGGTGATACTCCTTCAGCCTGCCGACTCTTTGATGCTATTGTTAGCTTGTGTGTCCCAGTGATAGTCAGTGACCAGATCGAGTTACCTTTTGAAGATGTCATAGACTACAGAAAAATTGCAATATTTGTAGATTCCACCTCTGCTGTAAAGCCAGGATTCTTGGTTAAGAATCTGAGAAAAATAACCAGAGAGAGAATTTTGGAATACCAGCGGGAGATGCAAGAGGTGACCCGATACTTCGAATATGAAGATACAAATGGAACAGTTAGTGAAATCTGGCGACAAGTCTCCATGAAGCTCCCACTTATTAAATTGATGATCAATCGTGATAAACGCCTTGTCAAGAGGGAAATGACTGAACCAGACTGCTCCTGTCTCTGTTCAAACCAGTCCGAGATCAGGACCTTTTTATGA 1386 47.62 MARKSILKSTVVTVLCVFGLYGLSTTFFNPINPYHSRLDLSLPLDSSSKSLSLLSTDSGENLSKFSRNFGPVKVYMYDLPRKFTYGVIESYAVARGGLEKVPVDDVSSLKYPGHQHSGEWYLFSDLIREDRGRRYVVRVSDPEEADLFYVSFFSSLSLVVNPIRPANGEGAGTGYSDEEMQESLMEWLEQQEYWKRNNGRDHVFICQDPNALHLIVDRVKNGVLLVSDFGRLRSDTASLVKDVILPYAHRIKSYSGEIGVENRKSLLFFMGNRYRKEGGKIRDLLFQILEQEEDVIIKHGAQSRESRRMASQGMHSSKFCLHPAGDTPSACRLFDAIVSLCVPVIVSDQIELPFEDVIDYRKIAIFVDSTSAVKPGFLVKNLRKITRERILEYQREMQEVTRYFEYEDTNGTVSEIWRQVSMKLPLIKLMINRDKRLVKREMTEPDCSCLCSNQSEIRTFL* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1418371 1422376 + Vvi1g141 Vvi1g141 769341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g141 461 Pfam Exostosin family 71 382 IPR040911 -
Vvi1g141 461 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 444 IPR004263 GO:0006486|GO:0016757
Vvi1g141 461 PANTHER ARABINOSYLTRANSFERASE ARAD1-RELATED 1 444 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g141 K23200 - vvi:100250738 885.945