Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g142 ATGATTTTTTCTGTTGGTTTGGGTGCTTCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGGTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAAACCCTCGGCCTCAATCGTCAATTTCAGGAGATCCCTGTGTCGGATTAGTGCTACAAACAATGAAGAGGCTACTGCCAAAGCTGCTGCAGCCAATGCCGACAGTGGAGCTCCAACCATATTTGACAAGATTATAGCTAAGGAGATTCCTTCAACCATTGTGTATGAGGATGAAAAAGTTCTAGCATTTCGGGATGTCAACCCACAAGCTCCAGTTCATGTTTTAGTCATTCCAAAGTTAAGAGATGGATTGACACAGCTTGGAAAGGCTGAAGTAAGACATGAACAGATACTGGGTCAACTTCTCTATGCAGCCAGATTAGTGGCAGAGAAAGAAGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGA 579 45.25 MIFSVGLGASASKSMAAMTSSFSIMRYTASTTTRAVRVLGTAKPSASIVNFRRSLCRISATNNEEATAKAAAANADSGAPTIFDKIIAKEIPSTIVYEDEKVLAFRDVNPQAPVHVLVIPKLRDGLTQLGKAEVRHEQILGQLLYAARLVAEKEGVLDGFRVVINSGPDACQSVYHLHLHVLGGRQMKWPPG* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1422451 1425224 - Vvi1g142 Vvi1g142 769342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g142 192 ProSitePatterns HIT domain signature. 165 183 IPR019808 -
Vvi1g142 192 SUPERFAMILY HIT-like 80 191 IPR036265 -
Vvi1g142 192 PANTHER HISTIDINE TRIAD HIT PROTEIN 47 192 IPR001310 -
Vvi1g142 192 ProSiteProfiles HIT domain profile. 82 192 IPR011146 GO:0003824
Vvi1g142 192 CDD PKCI_related 80 184 - -
Vvi1g142 192 Pfam HIT domain 89 186 IPR011146 GO:0003824
Vvi1g142 192 Gene3D - 61 192 IPR036265 -
Vvi1g142 192 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 47 192 - -
Vvi1g142 192 PRINTS Histidine triad family signature 82 98 IPR001310 -
Vvi1g142 192 PRINTS Histidine triad family signature 103 121 IPR001310 -
Vvi1g142 192 PRINTS Histidine triad family signature 172 182 IPR001310 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g142 - - vvi:100242206 350.132